Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5124 |
Symbol | hemE |
ID | 5872939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5731370 |
End bp | 5732434 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550262 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001671344 |
Protein GI | 167036113 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 47 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGCCC TGAAGAACGA TCGTTTCCTG CGTGCTCTGC TCAAGCAACC CGTAGACGTT ACCCCGGTGT GGATGATGCG CCAGGCCGGC CGCTACCTGC CGGAGTACCG CGCCAGCCGC GCCAAGGCCG GTGACTTCAT GAGCCTGTGC ATGAACCCGC AGTTTGCCTG CGAGGTCACC CTGCAGCCGC TGGACCGCTA CCCGCTGGAC GCAGCGATCC TGTTCTCGGA CATCCTCACC ATCCCTGATG CCATGGGCCT GGGCCTGTAC TTCGAAACCG GCGAAGGCCC GCGTTTCAAG AAGGTCATCA GCACCCCGGC CGACATCGAA GCACTGCCCA TCCCCGACCC GCAAAAAGAT CTGGGCTACG TGATGGACGC GGTCAGCACC ATCCGTCGCG AGCTTAACGG CCGCGTGCCG TTGATCGGCT TCTCCGGCAG CCCTTGGACC CTGGCCACCT ACATGGTTGA AGGCGGCTCG TCGAAGGACT TCCGCAAGAC CAAGGCCATG GCCTACGACA ACCCGCAAGC CCTGCACCTG CTGCTGGACA AGCTGGCCCA GTCGGTCACC AGCTACCTGA ACGGCCAGAT TCTGGCCGGT GCTCAGGCTG TGCAAATTTT CGATACCTGG GGCGGCAACC TGTCGGCGGC GGCCTACCAG GAATTCTCCC TGGCCTACAT GCGCAAGATC GTCAGCGGCC TGATCCGCGA GCACGAAGGG CGCAAGGTGC CGGTGATCCT GTTCACCAAG AACGGCGGCC TTTGGCTGGA AAGCATCGCC GAAGCCGGTG CCGATGCACT GGGCCTGGAC TGGACCTGCG AGATCGGCGA CGCCCGCCGC CGCGTGGGTG ACAGGGTGGC CCTGCAAGGC AACATGGACC CGACCGTGCT GTACGCCAAG CCCGAGGCCA TCCGCCAGGA AGTGGCGCGC ATCCTGGCCA GCTATGGCCA AGGCACAGGC CACGTATTCA ACCTGGGCCA TGGCATTACC CCGGAAGTCG ACCCGGAGCA TGCTGGCGTG TTCATCAACG CCGTGCATGA ACTGTCGGCG CAGTACCACC AGTGA
|
Protein sequence | MTALKNDRFL RALLKQPVDV TPVWMMRQAG RYLPEYRASR AKAGDFMSLC MNPQFACEVT LQPLDRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFK KVISTPADIE ALPIPDPQKD LGYVMDAVST IRRELNGRVP LIGFSGSPWT LATYMVEGGS SKDFRKTKAM AYDNPQALHL LLDKLAQSVT SYLNGQILAG AQAVQIFDTW GGNLSAAAYQ EFSLAYMRKI VSGLIREHEG RKVPVILFTK NGGLWLESIA EAGADALGLD WTCEIGDARR RVGDRVALQG NMDPTVLYAK PEAIRQEVAR ILASYGQGTG HVFNLGHGIT PEVDPEHAGV FINAVHELSA QYHQ
|
| |