Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5082 |
Symbol | |
ID | 5872897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5677501 |
End bp | 5679033 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641550220 |
Product | histidine ammonia-lyase |
Protein accession | YP_001671302 |
Protein GI | 167036071 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.150624 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGAAC TCACCCTCAA GCCTGGCACC CTGACCTTGG CCCAGTTGCG CGCGATCCAC GCCGCGCCCG TGCGCCTGCA ACTGGATGCC AGCGCCGCGC CGGCCATCGA CGCCAGCGTT GCCTGCGTCG AGCAAATCAT TGCCGAAGAC CGCACCGCCT ACGGCATCAA CACCGGTTTC GGCCTGTTGG CCTCGACCCG CATTGCCAGC CACGACCTGG AAAACCTGCA GCGCTCGCTG GTGCTGTCCC ACGCCGCCGG TATCGGCGCG CCGCTGGATG ACGACCTGGT GCGGTTGATC ATGGTGCTGA AAATCAACAG CCTCAGCCGT GGTTTTTCAG GCATTCGTCG CAAAGTCATC GACGCCCTGA TTGCCCTGGT AAACGCCGAA GTCTATCCGC ACATCCCGCT GAAAGGCTCC GTGGGTGCTT CCGGCGACTT GGCACCGCTG GCGCACATGT CGCTGGTGCT GCTGGGTGAA GGCAAAGCCC GCTACAAGGG CCAATGGCTG TCGGCTACCG AAGCCCTGGC GGTTGCCGGC CTCGAACCGC TGACCCTGGC TGCCAAAGAA GGCCTGGCCC TGCTCAACGG CACCCAGGCG TCCACCGCCT ATGCCCTGCG TGGCCTGTTC CAGGCCGAAG ACCTGTATGC CGCCGCCATC GCCTGCGGCG GCCTAAGCGT CGAAGCCGTA TTGGGCTCGC GTTCGCCGTT CGATGCGCGT ATCCACGAAG CGCGTGGCCA GCGCGGCCAG ATCGACACCG CCGCCTGCTT CCGCGACCTG CTGGGCGATT CCAGCGAAGT GTCGCTGTCG CACAAGAACT GTGACAAGGT TCAGGACCCG TACTCGCTGC GCTGCCAGCC GCAGGTCATG GGCGCGTGCC TGACCCAGCT GCGCCAGGCC GCCGAGGTAC TGGGCGTCGA AGCCAACGCT GTGTCGGACA ACCCGCTGGT GTTCGCTGCC GAGGGTGACG TGATTTCCGG TGGTAACTTC CACGCAGAGC CCGTGGCCAT GGCTGCCGAC AACCTGGCCC TGGCCATTGC CGAAATCGGC TCGCTCAGCG AGCGCCGCAT CTCGCTGATG ATGGACAAGC ACATGTCCCA GCTGCCGCCG TTCCTGGTGG AAAACGGTGG GGTGAACTCC GGCTTCATGA TCGCCCAGGT GACCGCTGCC GCCCTGGCCA GCGAGAACAA GGCCCTGTCG CACCCGCACA GCGTCGACAG CCTGCCAACC TCGGCCAACC AGGAAGACCA TGTGTCGATG GCCCCGGCTG CCGGCAAGCG CCTGTGGGAA ATGGCCGAAA ACACCCGTGG CGTACTGGCC ATCGAATGGC TGGGCGCCTG CCAGGGTCTG GACCTGCGCA AGGGCCTGAA GACTTCGGCC AAGCTGGAGA AGGCACGCCA GGCGCTGCGC AGCGAAGTGG CGCACTACGA CCGTGACCGT TTCTTCGCGC CAGACATCGA AAAGGCTGTG GAACTGTTGG CCAAGGGCAG CCTGACCGGT TTGTTGCCGG CGGGTGTGCT GCCAAGCCTG TAA
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Protein sequence | MTELTLKPGT LTLAQLRAIH AAPVRLQLDA SAAPAIDASV ACVEQIIAED RTAYGINTGF GLLASTRIAS HDLENLQRSL VLSHAAGIGA PLDDDLVRLI MVLKINSLSR GFSGIRRKVI DALIALVNAE VYPHIPLKGS VGASGDLAPL AHMSLVLLGE GKARYKGQWL SATEALAVAG LEPLTLAAKE GLALLNGTQA STAYALRGLF QAEDLYAAAI ACGGLSVEAV LGSRSPFDAR IHEARGQRGQ IDTAACFRDL LGDSSEVSLS HKNCDKVQDP YSLRCQPQVM GACLTQLRQA AEVLGVEANA VSDNPLVFAA EGDVISGGNF HAEPVAMAAD NLALAIAEIG SLSERRISLM MDKHMSQLPP FLVENGGVNS GFMIAQVTAA ALASENKALS HPHSVDSLPT SANQEDHVSM APAAGKRLWE MAENTRGVLA IEWLGACQGL DLRKGLKTSA KLEKARQALR SEVAHYDRDR FFAPDIEKAV ELLAKGSLTG LLPAGVLPSL
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