Gene PputGB1_5082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5082 
Symbol 
ID5872897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5677501 
End bp5679033 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content65% 
IMG OID641550220 
Producthistidine ammonia-lyase 
Protein accessionYP_001671302 
Protein GI167036071 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.150624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGAAC TCACCCTCAA GCCTGGCACC CTGACCTTGG CCCAGTTGCG CGCGATCCAC 
GCCGCGCCCG TGCGCCTGCA ACTGGATGCC AGCGCCGCGC CGGCCATCGA CGCCAGCGTT
GCCTGCGTCG AGCAAATCAT TGCCGAAGAC CGCACCGCCT ACGGCATCAA CACCGGTTTC
GGCCTGTTGG CCTCGACCCG CATTGCCAGC CACGACCTGG AAAACCTGCA GCGCTCGCTG
GTGCTGTCCC ACGCCGCCGG TATCGGCGCG CCGCTGGATG ACGACCTGGT GCGGTTGATC
ATGGTGCTGA AAATCAACAG CCTCAGCCGT GGTTTTTCAG GCATTCGTCG CAAAGTCATC
GACGCCCTGA TTGCCCTGGT AAACGCCGAA GTCTATCCGC ACATCCCGCT GAAAGGCTCC
GTGGGTGCTT CCGGCGACTT GGCACCGCTG GCGCACATGT CGCTGGTGCT GCTGGGTGAA
GGCAAAGCCC GCTACAAGGG CCAATGGCTG TCGGCTACCG AAGCCCTGGC GGTTGCCGGC
CTCGAACCGC TGACCCTGGC TGCCAAAGAA GGCCTGGCCC TGCTCAACGG CACCCAGGCG
TCCACCGCCT ATGCCCTGCG TGGCCTGTTC CAGGCCGAAG ACCTGTATGC CGCCGCCATC
GCCTGCGGCG GCCTAAGCGT CGAAGCCGTA TTGGGCTCGC GTTCGCCGTT CGATGCGCGT
ATCCACGAAG CGCGTGGCCA GCGCGGCCAG ATCGACACCG CCGCCTGCTT CCGCGACCTG
CTGGGCGATT CCAGCGAAGT GTCGCTGTCG CACAAGAACT GTGACAAGGT TCAGGACCCG
TACTCGCTGC GCTGCCAGCC GCAGGTCATG GGCGCGTGCC TGACCCAGCT GCGCCAGGCC
GCCGAGGTAC TGGGCGTCGA AGCCAACGCT GTGTCGGACA ACCCGCTGGT GTTCGCTGCC
GAGGGTGACG TGATTTCCGG TGGTAACTTC CACGCAGAGC CCGTGGCCAT GGCTGCCGAC
AACCTGGCCC TGGCCATTGC CGAAATCGGC TCGCTCAGCG AGCGCCGCAT CTCGCTGATG
ATGGACAAGC ACATGTCCCA GCTGCCGCCG TTCCTGGTGG AAAACGGTGG GGTGAACTCC
GGCTTCATGA TCGCCCAGGT GACCGCTGCC GCCCTGGCCA GCGAGAACAA GGCCCTGTCG
CACCCGCACA GCGTCGACAG CCTGCCAACC TCGGCCAACC AGGAAGACCA TGTGTCGATG
GCCCCGGCTG CCGGCAAGCG CCTGTGGGAA ATGGCCGAAA ACACCCGTGG CGTACTGGCC
ATCGAATGGC TGGGCGCCTG CCAGGGTCTG GACCTGCGCA AGGGCCTGAA GACTTCGGCC
AAGCTGGAGA AGGCACGCCA GGCGCTGCGC AGCGAAGTGG CGCACTACGA CCGTGACCGT
TTCTTCGCGC CAGACATCGA AAAGGCTGTG GAACTGTTGG CCAAGGGCAG CCTGACCGGT
TTGTTGCCGG CGGGTGTGCT GCCAAGCCTG TAA
 
Protein sequence
MTELTLKPGT LTLAQLRAIH AAPVRLQLDA SAAPAIDASV ACVEQIIAED RTAYGINTGF 
GLLASTRIAS HDLENLQRSL VLSHAAGIGA PLDDDLVRLI MVLKINSLSR GFSGIRRKVI
DALIALVNAE VYPHIPLKGS VGASGDLAPL AHMSLVLLGE GKARYKGQWL SATEALAVAG
LEPLTLAAKE GLALLNGTQA STAYALRGLF QAEDLYAAAI ACGGLSVEAV LGSRSPFDAR
IHEARGQRGQ IDTAACFRDL LGDSSEVSLS HKNCDKVQDP YSLRCQPQVM GACLTQLRQA
AEVLGVEANA VSDNPLVFAA EGDVISGGNF HAEPVAMAAD NLALAIAEIG SLSERRISLM
MDKHMSQLPP FLVENGGVNS GFMIAQVTAA ALASENKALS HPHSVDSLPT SANQEDHVSM
APAAGKRLWE MAENTRGVLA IEWLGACQGL DLRKGLKTSA KLEKARQALR SEVAHYDRDR
FFAPDIEKAV ELLAKGSLTG LLPAGVLPSL