| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5068 |
|---|
| Symbol | |
|---|
| ID | 5872883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5659382 |
|---|
| End bp | 5660170 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641550206 |
|---|
| Product | Sec-independent protein translocase, TatC subunit |
|---|
| Protein accession | YP_001671288 |
|---|
| Protein GI | 167036057 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.57281 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA ATCCGGAACA CGACCAGCCT ATGCCGCTGG TTTCGCACCT GACCGAACTG
CGCACCCGCC TGCTGCGCTG CGTTGCCGTC ATTTTCCTGA TCTTTGCCGG GCTGTTCTCC
TTCGCCCAGC AGATCTACAC CCTGGTCTCG GCGCCTCTGC GCGACCATTT GCCGGCCAAC
GCGACGATGA TCGCCACCGA CGTGGCCTCG CCGTTCCTCA CGCCGTTCAA GCTGACCATG
ATCGTGTCGC TGTTCCTGGC CATCCCGTTC ATTCTCCAGC AGATCTGGGG CTTTATCGCG
CCAGGGCTGT ACCGCCATGA AAAACGCATT GCCATTCCAC TGCTGGTGTC GAGCATTCTG
TTGTTCTACG CCGGTATGGC CTTTGCCTAT TTCCTGGTGT TCCCGCTGAT GTTCAAGTTC
TTTGCCGCCG CCACCCCGGC AGGCGTGGCA ATGATGACCG ACATCGCCAA CTACCTCGAC
TTCGTGATGA CGCTGTTCTT CGCCTTTGGC GTTGCCTTCG AAATCCCGGT GGCGGTGGTG
CTGCTGGTGT GGATCGGCGT GGTCGACGTG AAGTACCTGA AGAAGATCCG CCCCTACGTG
ATCATCGGCT GTTTCGTGGT CGGCATGGTC CTCACCCCGC CGGACATCTT CTCCCAGACT
TTGCTGGCCG TGCCCATGTG GCTGCTGTTC GAGGTCGGTG TGCTGTGCGG CAGCCTGATC
CGCAAGCGTA GTGCCCACGA CGAAGAAGCC AACGACCACA ACGACCAGCC ACCTGCGACC
CAACCGTGA
|
|---|
| Protein sequence | MSENPEHDQP MPLVSHLTEL RTRLLRCVAV IFLIFAGLFS FAQQIYTLVS APLRDHLPAN
ATMIATDVAS PFLTPFKLTM IVSLFLAIPF ILQQIWGFIA PGLYRHEKRI AIPLLVSSIL
LFYAGMAFAY FLVFPLMFKF FAAATPAGVA MMTDIANYLD FVMTLFFAFG VAFEIPVAVV
LLVWIGVVDV KYLKKIRPYV IIGCFVVGMV LTPPDIFSQT LLAVPMWLLF EVGVLCGSLI
RKRSAHDEEA NDHNDQPPAT QP
|
|---|
| |