Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5003 |
Symbol | |
ID | 5872818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5588741 |
End bp | 5590924 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550141 |
Product | YccS/YhfK family integral membrane protein |
Protein accession | YP_001671223 |
Protein GI | 167035992 |
COG category | [S] Function unknown |
COG ID | [COG1289] Predicted membrane protein |
TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666 [TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.481214 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCGA GCTCGTTCCG TCAGTCACTG CGTCGCCTGT GGGGCCAAGA CAAGTTCAGC TACAGCATCC GGGTCACCAT CGCCCTCACC GGCAGCCTGG CCCTGTGCTG GTACCAGAAC GAGATGGCCC TGCTGATTCC GCTGTTCCTC GGCATCATCG CCAGCGCCCT GGCCGAAACC GACGACAGCT GGCAAGGCCG CCTTAGCGCC TTGGCCGTTA CCCTGGTGTG TTTCGCCATC GCTGCGCTGG CGGTCGAACT ACTGTTCCCC TACCCCTGGG TCTTTGCCAT CGCCCTGGCC CTGGCGGCGT TTGGTCTGAC CATGCTTGGC GCCTTGGGCG AGCGCTATGG TGCGATTGCC TCGGCGACAC TGATCACGGC GGTTTACACC ATGATCGGTG TGGACCAGCG CGGCGGCCAA GTGACGGACT TCTGGCACGA GCCGCTGCTG CTGGTGGCGG GTGCGGCCTG GTACGGGCTG CTTTCAGTAC TTTGGCAGGC GCTGTTTTCC AACCAGCCGG TGCAGCAGAG CCTGGCCAAG CTGTTCTACG AACTGGGCAG CTACCTCAAG CTGAAGGCCA GCCTGTTCGA ACCGATCCGC ACCCTCGACG TCGAGGCCCG GCGCCTGGAG CTGGCCCAAC AGAATGGCAA GGTGGTGGCC GCGCTGAACG CAGCCAAGGA AATCATCCTG CACCGGGTGG GCAACAGCCA ACCGAACTCG AAGGTCAGCC GTTACCTCAA GCTGTACTTC CTGGCCCAGG ACATTCACGA ACGGGTCAGT GCCTCGCACT ACCCCTACAA CGCACTGACC GAGGCGTTTT TCCACAGTGA CGTGATGTTC CGCTGCCAGC GCCTGCTGCG TAAGCAGGGT TCATCCTGCC AGGAGCTGGC CCGCTCGATC CGCCTGCGCC AGCCATTCGT GCTGGCAAGC GGTTATCCCG AAGCCCTCGA GGACCTCAAC GCTTCACTTG AGCACCTGCG TATCCAGAGC AACCCGGCCT GGCGTGGCCT GTTGCGCTCG CTGCGGGCGC TGGCCGCCAA CCTGGCAACG CTGGACCGCC AGCTCAGTGC CGCCAGCAAC CCTGACAGCC TGGCCGACGC CAGCGACAGC AGCCTGCTCG ACCGCTCGCC ACGCTCGCTG AAGGATGTGT GGACGCGCCT GCGCACCCAG CTCACACCGA CCTCGTTGCT GTTCCGCCAC GCCTTGCGCC TGCCGCTGGC GCTGTCGATC GGCTACGGCA TGGTGCACCT GATTCACCCG ACCCAGGGCT ACTGGATCAT CCTCACCACG CTGTTCGTGT GCCAGCCCAA CTACGGTGCA ACCCGGCGCA AGCTGGTGCA GCGCATCTTC GGCACCGCTG TCGGCCTGAC GGTGGGCTGG GCCTTGTTCG ACCTGTTCCC CAACCCGGTC ATCCAGTCGC TGTTCGCCGT GGTCGCCGGG GTGGTGTTCT TCGTCAACCG CACCACCCGC TACACCTTGG CCACGGCCGC GATCACCCTG ATGGTGCTGT TCTGCTTCAA CCAGATCGGC GATGGCTACG GCCTGTTCCT GCCACGCCTG TTCGATACCC TGGTGGGCAG CCTGATCGCC ATCCTTGCGG TGTTCCTGTT CTTGCCTGAC TGGCAAGGGC GACGGCTGAA CAAGGCGCTG GCCAATACCC TGGCCTGCGC CAGCGTGTAC CTGCGCCAGA TCATGCAGCA GTATGCCCAT GGCAAGCGTG ACGACCTGGC TTACCGCCTG GCCCGGCGCA ATGCTCACAA CGCCGACGCG GCACTGTCCA CCACCTTGGC CAACATGCTG ATGGAGCCGG GACATTTCCG TAAGGAGGCC GACGTTGGCT TCCGCTTCCT GGTGCTGTCG CACACCTTGC TCAGCTACCT CTCGGGGCTG GGCGCGCACC GCGACACGGC GTTGCCGGCG CAGGTGCAGG AGCAGTTGAT CGAAGGTGCC GGGCAAAGCC TGGCCAGCAG CCTGGACGAG ATCGCCAACG GTTTGGCGGC GCGGCTGCCG ATCGCGATTC ACAGTGATGC CGAAGAAGCA CTGGCCAATG CCCTGGAGCA AATGCCGGAA GAACTGGATG AGCATCAGCG GCTGGTGCAG ACGCAGTTGG CATTGATCTG CCGGCAGTTG GGGCCATTGA GGACCTTGGC GGCGCACCTG ATCAAGGAAG GTGCGCCGGC CTGA
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Protein sequence | MSSSSFRQSL RRLWGQDKFS YSIRVTIALT GSLALCWYQN EMALLIPLFL GIIASALAET DDSWQGRLSA LAVTLVCFAI AALAVELLFP YPWVFAIALA LAAFGLTMLG ALGERYGAIA SATLITAVYT MIGVDQRGGQ VTDFWHEPLL LVAGAAWYGL LSVLWQALFS NQPVQQSLAK LFYELGSYLK LKASLFEPIR TLDVEARRLE LAQQNGKVVA ALNAAKEIIL HRVGNSQPNS KVSRYLKLYF LAQDIHERVS ASHYPYNALT EAFFHSDVMF RCQRLLRKQG SSCQELARSI RLRQPFVLAS GYPEALEDLN ASLEHLRIQS NPAWRGLLRS LRALAANLAT LDRQLSAASN PDSLADASDS SLLDRSPRSL KDVWTRLRTQ LTPTSLLFRH ALRLPLALSI GYGMVHLIHP TQGYWIILTT LFVCQPNYGA TRRKLVQRIF GTAVGLTVGW ALFDLFPNPV IQSLFAVVAG VVFFVNRTTR YTLATAAITL MVLFCFNQIG DGYGLFLPRL FDTLVGSLIA ILAVFLFLPD WQGRRLNKAL ANTLACASVY LRQIMQQYAH GKRDDLAYRL ARRNAHNADA ALSTTLANML MEPGHFRKEA DVGFRFLVLS HTLLSYLSGL GAHRDTALPA QVQEQLIEGA GQSLASSLDE IANGLAARLP IAIHSDAEEA LANALEQMPE ELDEHQRLVQ TQLALICRQL GPLRTLAAHL IKEGAPA
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