| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4936 |
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| Symbol | |
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| ID | 5872749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5504370 |
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| End bp | 5506943 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641550072 |
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| Product | ribonuclease R |
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| Protein accession | YP_001671156 |
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| Protein GI | 167035925 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000328048 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA ATACGACAAC
CCCATTCCCA GCCGTGAGCT GATCCTGCAG CGCCTCGCCG ACCGTGGCGA ACCCGCTGCC
CGCGAGGAGC TGGCGAAAGA GTTTGGTCTG TATGAGGAAG ACCAGATCGA AGCCCTGCGC
CGCCGCCTGC GTGCCATGGA GCGCGATGGC CAGCTTATCT ATACCCGGCG CGGCACTTAT
GCCCCGGTGG ACAAGCTGGA CCTGATCTGC GGCCGTATCT CCGGCCACCG CGACGGTTTT
GGTTTCCTCA TCCCCGATGA TGGCAGTGAT GACCTGTTCC TTGGCCCGTC GCAGATGCGT
CTGGCCTTCG ATGGCGACCG CGCGTTGGCG CGGGTTTCCG GCACAGACCG CCGTGGGCGC
CGTGAAGGGG TGATCGTCGA GGTCATTTCC CGCGCCCATG AGAGCGTGGT CGGTCGCTAT
TTCGAAGAAG GCGGCATTGG CTACGTGACG CCGGACAACC CGAAGATCCA GCAGGAAGTG
CTGGTGACCG CCGGGCGTAA CGGCGGTGCC AAGATCGGTC AGTTCGTCGA AATCAAGATC
ACCCACTGGC CAACCCCGCG CTTCCAGCCG CAAGGCGATG TGGTCGAGGT CATCGGCAAC
TACATGGCCC CAGGCATGGA AATCGACGTA GCCCTGCGCA GCTACGACAT CCCGCACGTC
TGGCCTGCTG ATGTGGTCAA GGAAGCACGC AAGTTCCGCT CCGAAGTCGA GGAGAAGGAT
AAAGAGAAGC GCGTCGACCT GCGCCATCTG CCGTTCGTCA CCATTGATGG TGAAGACGCC
CGCGACTTCG ACGATGCCGT TTATTGCGAG CCCCTGGGCA AGCTGCGCCT GTTCTCCGGT
GGCTGGCGTC TGTACGTGGC CATTGCCGAC GTTTCCAGCT ACGTGCGCCT GGGCTCGGCC
CTGGATGTCG AAGCCCAGCA GCGCGGCAAC TCGGTGTACT TCCCCGAGCG TGTGGTGCCG
ATGCTCCCCG AAGAGCTGTC CAACGGCCTG TGCTCGCTGA ACCCGCATGT CGACCGGTTG
GCCATGGTTT GTGAAATGAC CATGAACAAA GCCGGCCAGA TGGTCGACTA TCAGTTCTAC
GAAGGCGTGA TCCACTCTCA CGCCCGCCTG ACCTACAACA AGGTCAGCAG CATGCTCGAG
CACGCCCGTA CCCGTGAGGG TAAAGCGCTG CGCGAAGAGT ACAAGGAAGT CGTGCCGGAC
CTGAAGAACC TGTACAACCT GTACAAGGTG CTGGTGGATG CGCGTCACAC GCGTGGTGCC
ATCGACTTCG AAACCCAGGA AACCCGCATC ATCTTCGGTG ACCAGCGCAA GATCGCGGAA
ATTCGCCCGA CCGTACGCAA TGATGCCCAC AAGCTGATCG AGGAATGCAT GCTGGCGGCC
AACGTGGCCA CCGCCGAGTT CCTGCAGAAG CATGGCGTGC CAGCCCTGTA CCGCGTGCAC
GACGGCCCGC CGCCGGAGCG CCTGGAAAAG CTGCGCGCCT TCCTGGGTGA GCTGGGCCTG
AGCCTGCACA AGGGCAAGGA CCCGTCGCCG AAGGACTACC AGGCTCTGCT GGCGAGCATC
GCCGGGCGCC CGGACTTCCA CCTGATTCAG ACCGTCATGC TGCGCTCGCT GAGCCAGGCG
GTGTACAGCA CCGAGAACAA CGGCCACTTT GGCTTGAACT ACGAGGCGTA CACCCACTTT
ACCTCGCCGA TCCGCCGTTA CCCGGACCTG CTGGTGCACC GCGCCATCCG CAGCATCATC
CGTTCCAAGG TAGATACCCC GCACGTCAAG CGTGCCGGTG CCATGAGCAT CCCCAAGGCG
CGTATCTACC CGTACGACGA AAACACCCTG GAGCAACTCG GCGAACAGTG CTCGATGACC
GAGCGCCGGG CCGACGAGGC CACCCGTGAC GTGGTCAACT GGCTCAAGTG CGAGTTCATG
AAGGACCGTG TGGGCGAGAC GTTCCCGGGT GTGATCACTG CGGTGACCGG TTTTGGCCTG
TTCGTCGAGC TGACCGATAT CTATGTGGAA GGCCTGGTGC ACGTCAGTGC GCTGCCGGGC
GACTATTACC ACTTCGACCC GGTGCATCAC CGCCTGTCCG GCGAGCGCAC AGGGCGCAGC
TTCCGCCTGG GCGACACCAT CGAAGTCAAG GTCATGCGCG TCGATCTGGA CGAGCGCAAG
ATCGACTTCG AAGTGTCGGA CAAGACCCTC GCCGCACCGA TCGGCCGCAA GCAGCGCGGC
GCCGCACAGG CTACCGAAAA GGCCGAGCAG CCGCCGGTTG CCGAAGCGAA AGCCACGCCC
AAGCCGCGCA GCCGCAAAAG CGAAGCGTCC GAAGCGTATT TCCCCAAGGA TGCCGTGCAG
CGCAATGCTG AAGTGCGTAA AAGCCGCGAG ATGAAAAAAG CCCTGATGAC CGACGCGCGC
AGCAGTGCTG GCAGCAAGTC GGAAAAAGGT GGCAAGCCGT CCGGCAAACC GACCAAGCAC
CGTAAAGGCC CGCCGAAGTC CGGCGCGCCA CGCAAGAGCA AGAGCAAGTC ATGA
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| Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILQ RLADRGEPAA REELAKEFGL YEEDQIEALR
RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRISGHRDGF GFLIPDDGSD DLFLGPSQMR
LAFDGDRALA RVSGTDRRGR REGVIVEVIS RAHESVVGRY FEEGGIGYVT PDNPKIQQEV
LVTAGRNGGA KIGQFVEIKI THWPTPRFQP QGDVVEVIGN YMAPGMEIDV ALRSYDIPHV
WPADVVKEAR KFRSEVEEKD KEKRVDLRHL PFVTIDGEDA RDFDDAVYCE PLGKLRLFSG
GWRLYVAIAD VSSYVRLGSA LDVEAQQRGN SVYFPERVVP MLPEELSNGL CSLNPHVDRL
AMVCEMTMNK AGQMVDYQFY EGVIHSHARL TYNKVSSMLE HARTREGKAL REEYKEVVPD
LKNLYNLYKV LVDARHTRGA IDFETQETRI IFGDQRKIAE IRPTVRNDAH KLIEECMLAA
NVATAEFLQK HGVPALYRVH DGPPPERLEK LRAFLGELGL SLHKGKDPSP KDYQALLASI
AGRPDFHLIQ TVMLRSLSQA VYSTENNGHF GLNYEAYTHF TSPIRRYPDL LVHRAIRSII
RSKVDTPHVK RAGAMSIPKA RIYPYDENTL EQLGEQCSMT ERRADEATRD VVNWLKCEFM
KDRVGETFPG VITAVTGFGL FVELTDIYVE GLVHVSALPG DYYHFDPVHH RLSGERTGRS
FRLGDTIEVK VMRVDLDERK IDFEVSDKTL AAPIGRKQRG AAQATEKAEQ PPVAEAKATP
KPRSRKSEAS EAYFPKDAVQ RNAEVRKSRE MKKALMTDAR SSAGSKSEKG GKPSGKPTKH
RKGPPKSGAP RKSKSKS
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