| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4896 |
|---|
| Symbol | |
|---|
| ID | 5872709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5463230 |
|---|
| End bp | 5464651 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641550032 |
|---|
| Product | D-alanine/D-serine/glycine permease |
|---|
| Protein accession | YP_001671116 |
|---|
| Protein GI | 167035885 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.673653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.259186 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAA CCTCACCCTC AACGCCAGAT GAACAGCATC TGCAGCGCAA CCTGACCAAC
CGCCACATCC AGCTGATCGC CATCGGCGGC GCGATCGGTA CCGGCCTGTT CATGGGCTCG
GGCAAAACCA TCAGCCTGGC CGGGCCGTCG ATCATCTTCG TCTACATGAT CATCGGCTTC
ATGCTGTTCT TCGTCATGCG CGCCATGGGC GAACTGCTGC TGTCGAACCT GAACTACAAG
TCGTTCATCG ACTTCTCCGC CGACCTGCTC GGCCCCTGGG CCGGCTATTT CACCGGCTGG
ACCTACTGGT TCTGCTGGGT GGTCACCGGC ATCGCCGACG TGGTCGCCAT CGCCGCCTAC
ACACAGTTCT GGTTTCCCGA CTTGCCACAG TGGATACCGG CGCTGACCTG CGTCGGGCTG
CTGCTGTCGC TGAACCTGGT GACGGTGAAA ATGTTCGGCG AGCTGGAATT CTGGTTCGCC
CTGGTCAAGA TCGTCGCCAT CCTTGGCCTG GTCGCGACTG GCCTGTACAT GGTGATCACC
GGCTTCACCT CGCCCAGCGG GCGCACCGCA CAGCTGGCCA ACCTGTGGAA TGACAGCGGC
ATGTTCCCCC ATGGCCTGAT GGGCTTCTTC GCCGGTTTCC AGATCGCGGT GTTCGCCTTC
GTCGGCATCG AGCTGGTGGG TACCACCGCC GCCGAAGCGA AGAACCCGGA GCGCACCCTG
CCGCGGGCGA TCAACTCGAT CCCGATCCGC ATCATCGTGT TCTATGTGCT GGCGCTGATC
GCGATCATGG CCGTGACCCC ATGGCGCGAC GTGGTGCCAG GCAAGAGCCC GTTCGTCGAA
CTGTTCGTGC TGGCGGGCCT GCCGGCAGCG GCGAGCATCA TCAACTTCGT GGTACTGACC
TCGGCGGCCT CGTCGGCCAA CAGCGGCGTG TTCTCCACCA GCCGCATGCT CTACGGCCTG
AGCCAGGAGG GTGATGCGCC CAAGGCCTTC GAGAAGCTGT CGAGCCGCTC GGTACCGGCC
AACGGCCTGT ACTTCTCCTG CACCTGCCTG CTGCTGGGCG CGGTACTGAT CTACCTGGTA
CCGGACGTGG TCGAGGCGTT CACCCTGGTG ACCACGGTGT CGGCGGTGCT GTTCATGTTC
GTCTGGACGC TGATCCTGCT GTCGTACCTG AAGTACCGCA AAAACCGCGC AGCGCTGCAC
CAGGCGTCGA AGTACAAGAT GCCCGGCGGG CGCTTCATGT GCTACGTGTG CCTGGTGTTC
TTCGCCGGCA TCCTGGTGCT GCTGAGCCTG GAGGCCGACA CCCGCTCGGC GCTGGTAGTG
ACGCCGATCT GGTTCATGAT TCTGGCGGTG ACGTATCAGT TCGTGCGCAG CAGACGCCAT
CCACGCGGCG CTACGCCACA GGTGGAGCAG AGCCAGCGCT AA
|
|---|
| Protein sequence | MTQTSPSTPD EQHLQRNLTN RHIQLIAIGG AIGTGLFMGS GKTISLAGPS IIFVYMIIGF
MLFFVMRAMG ELLLSNLNYK SFIDFSADLL GPWAGYFTGW TYWFCWVVTG IADVVAIAAY
TQFWFPDLPQ WIPALTCVGL LLSLNLVTVK MFGELEFWFA LVKIVAILGL VATGLYMVIT
GFTSPSGRTA QLANLWNDSG MFPHGLMGFF AGFQIAVFAF VGIELVGTTA AEAKNPERTL
PRAINSIPIR IIVFYVLALI AIMAVTPWRD VVPGKSPFVE LFVLAGLPAA ASIINFVVLT
SAASSANSGV FSTSRMLYGL SQEGDAPKAF EKLSSRSVPA NGLYFSCTCL LLGAVLIYLV
PDVVEAFTLV TTVSAVLFMF VWTLILLSYL KYRKNRAALH QASKYKMPGG RFMCYVCLVF
FAGILVLLSL EADTRSALVV TPIWFMILAV TYQFVRSRRH PRGATPQVEQ SQR
|
|---|
| |