| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4894 |
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| Symbol | |
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| ID | 5872707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5459515 |
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| End bp | 5461581 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641550030 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001671114 |
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| Protein GI | 167035883 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.386711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.630866 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCT GCACCCCTGT TTTTGCCTTG TCCCTGCGTG GGACTCTCGC CGCCGTGTGC
GGCTCGCTGC TCGCGCCCGT GGCCCTGGCC GCCGACCCTG GCCATGAAGG CCATGCGCAC
GACGCACCCG AGCTGAGCCC GACGGTCATC ACTGCCGTGG CGCCCAGTTC GCCACTGACC
GTGGTCACCA ACCCGAAAGA CCCGCGCCAA CCGGTGCCGG CCAGCGACGG CGCCGACTAC
CTGAAGACCA TCCCAGGCTT CTCGGCGATC CGTGCCGGCG GCACCAACGG CGACCCGGTG
TTGCGGGGCA TGTTCGGCTC ACGCCTGAAC ATCCTCACCA ACGGCGGCCT GATGCTGGGC
GCTTGCCCTA ACCGCATGGA CGCGCCCACC TCTTACATTT CGCCGGAAAC CTACGACCGC
CTGACTGTGA TCAAAGGCCC GCAAAGCGTG ATCTGGGGCC CCGGTGGTTC GGCAGGCACC
ATCCTCTTCG AGCGCGAGCC CGAGAAGTTC GGCGCCCTCG GCAGCCGCGT GAACGCCAGC
CTGCTGGCCG GCTCCAACGG CCGCTTCGAC AAAGTGCTGG ATGCCGCCGC CGGCAACAGC
CAGGCCTACG CCCGCTTCGT CGGCAACCAG TCACGCTCGG ATGACTACCA CGACGGCAAC
GACGACACCG TGCCATCGCG CTGGGAAAAG TGGAACGGCG ATGTCGCCCT CGGCTGGACG
CCAGACCAGG ACACCCTGCT GGAGCTGACC GCCGGCAAGG GCGATGGCGA GGCCCGCTAC
GCCGGGCGCG GCATGGACGG CTCGCAGTTC AAGCGCGAAA GTCTGGGCCT GCGCTTTGAA
AAGTCCAACC TCGGCGAGGT GCTCGACAAG GTCGAGGCAC AGGTCTACTA CAACTACGCC
GACCATGTGA TGGACAACTA CAGCCTGCGC ACACCGTCGG GCAGCGGCAT GATGGGCATG
CCGATGGTCA GCAACGTCGA CCGCCGCACC CTGGGCGCAC GCATCAAAGC CACCTGGCGA
TGGGCCGATG TGCAGCTGAT CAGCGGCATC GACGCGCAAA CCAACGAACA TCGCCAGCGT
GGCGGCATGG GTGTGGACGC ACACAAGGGC CAATCCTGGA CCAAGGACGC CGACTTCCAC
AACTACGGCG CTTTCAGCGA ACTGACCTGG TATGTCAGCG GTGAAGACCG GCTGATTACC
GGCGCCCGCC TGGACCGCGC CTCAGCCCGT GACTTCCGTA AAGGCAGCGC CACCGAAGGC
GATACCCGCG CCGACACCCT GCCCAGCGGT TTTATCCGCT ACGAGCACGA CCTGGCAGCC
CTCCCGGCCA CCACTTACAT TGGCCTCGGC CATGCCCAGC GCTTCCCTGA CTACTGGGAG
CTGTTCTCGC CCAAGCTGGC ACCGCCTGGG GCGGCCAACG CCTTCGACGG CATCAAGCCA
GAGAAGACCA CCCAACTCGA CTTCGGCATC CAGTACCGCA CCGAACGCCT GGAGGCCTGG
GCGTCGGGCT ATGTCGGGCA GATCCGCGAC TACATCCTGT TCGACTACCG CACCGGCATG
ATGGGCATGA GCACTTCCCG GGCACAGAAC ATCGACGCCC GCATCATGGG CGGCGAACTG
GGCGCGGCCT ACCTGCTGAC CGAAAACTGG AAGGCCGACG CCACGCTGGC CTACGCTTGG
GGCAAGAACA GCAGTGATGG CAAAGCGCTA CCCCAAATGC CACCACTGGA AAGCCGTCTG
GGCTTGACCT ACAGCCGCGA TGTGTGGAGC GTCGGCGCAC TGTGGCGGCT GGTGGCGGCG
CAAAACCGCA TTGCCGAGAA CCAAGGCAAC GTGGTCGGCA AGGACTACGA CAAGAGCGCC
GGCTTCGGCG TGTTCTCGCT CAACGGCGCC TACAAGGTGA ACAACAACCT CAAGCTCAGC
GCAGGGGTCG ACAACCTGTT CGACAAAACC TACGCCGAGC ACTTGAACCT GGCCGGGAAC
GCCGGGTTCG GCTACCCGGC TACCGATCCT CAGCCGGTCA ACGAGCCAGG CAGGACCTTC
TGGACCAAGG TCGATTTCAG CTTCTGA
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| Protein sequence | MSGCTPVFAL SLRGTLAAVC GSLLAPVALA ADPGHEGHAH DAPELSPTVI TAVAPSSPLT
VVTNPKDPRQ PVPASDGADY LKTIPGFSAI RAGGTNGDPV LRGMFGSRLN ILTNGGLMLG
ACPNRMDAPT SYISPETYDR LTVIKGPQSV IWGPGGSAGT ILFEREPEKF GALGSRVNAS
LLAGSNGRFD KVLDAAAGNS QAYARFVGNQ SRSDDYHDGN DDTVPSRWEK WNGDVALGWT
PDQDTLLELT AGKGDGEARY AGRGMDGSQF KRESLGLRFE KSNLGEVLDK VEAQVYYNYA
DHVMDNYSLR TPSGSGMMGM PMVSNVDRRT LGARIKATWR WADVQLISGI DAQTNEHRQR
GGMGVDAHKG QSWTKDADFH NYGAFSELTW YVSGEDRLIT GARLDRASAR DFRKGSATEG
DTRADTLPSG FIRYEHDLAA LPATTYIGLG HAQRFPDYWE LFSPKLAPPG AANAFDGIKP
EKTTQLDFGI QYRTERLEAW ASGYVGQIRD YILFDYRTGM MGMSTSRAQN IDARIMGGEL
GAAYLLTENW KADATLAYAW GKNSSDGKAL PQMPPLESRL GLTYSRDVWS VGALWRLVAA
QNRIAENQGN VVGKDYDKSA GFGVFSLNGA YKVNNNLKLS AGVDNLFDKT YAEHLNLAGN
AGFGYPATDP QPVNEPGRTF WTKVDFSF
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