| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4873 |
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| Symbol | |
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| ID | 5872686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5438669 |
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| End bp | 5439682 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641550009 |
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| Product | NifR3 family TIM-barrel protein |
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| Protein accession | YP_001671093 |
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| Protein GI | 167035862 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGG TACGCATCGG CCAATACACA CTACGTAACA ACCTGATCCT CGCGCCCATG
GCCGGGGTCA CGGACCAGCC TTTCCGTACA CTTTGCCAGC GCCTGGGCGC CGGCATGGTG
GTGTCGGAAA TGGTCAGCAG CGACATGAGC CTGTGGAACA GCCGCAAGTC GAGCCTGCGC
CGCATCCATG AAGGCGATCC CGAGCCACGC TCGGTGCAGA TCGCCGGCGG TGATGCGCAG
ATGATGGCGG CGGCGGCGAA GGCCAACGTC GAAGCGGGTG CCCAGATCAT CGATATCAAC
ATGGGCTGCC CGGCAAAAAA AGTCTGCAAC AAAGCTGCAG GCTCTGCTTT ATTGAGAGAT
GAAGCCTTGG TCAGTGAGAT CCTCCATGCC GTGGTCGGCG CTGTGGACGT TCCGGTGACC
CTGAAGATCC GCACCGGCTG GGACCGGGCG AACAAGAACG GCCTGAACGT GGCGAAGATC
GCTGAACAGG CCGGCATCCA GGCGCTGGCG GTGCATGGCC GCACACGCGC CGACCTGTAC
ACCGGCGATG CCGAATACGA CACCATCGCT GCCATCAAGC AGGCGGTGTC AATCCCGGTT
TTTGCCAACG GCGATATCAC TTCGCCAGAA AAGGCCCGAG CGGTGCTGGA CGCCACCGGG
GTCGATGGCC TGCTGATTGG CCGGGCTGCC CAGGGGCGGC CATGGATCTT TCGCGAGATC
GAGCATTACC TGCGCACTGG CGAACATTTG CCAGCGCCGC AGCTGGACGA AGTGGAACGC
ATCCTGCTGG AGCACCTGGC CGCGCTGCAT GCCTTCTATG GCGATGTGAT GGGCGTTCGT
ATCGCCCGCA AGCACGTTGG CTGGTACCTG GCAACACGAC CCGGCGGCAA GGAGTTTCGC
TCCCGGTTCA ACGCTTTGGA AGACACACAA GCGCAGTGCG CCAACGTTCG CGCGTTTTTC
AGCGAACGTC GACAGAGCCT TGAGACAGAG GACGGACAAG GGGTGGCCGC ATGA
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| Protein sequence | MSAVRIGQYT LRNNLILAPM AGVTDQPFRT LCQRLGAGMV VSEMVSSDMS LWNSRKSSLR
RIHEGDPEPR SVQIAGGDAQ MMAAAAKANV EAGAQIIDIN MGCPAKKVCN KAAGSALLRD
EALVSEILHA VVGAVDVPVT LKIRTGWDRA NKNGLNVAKI AEQAGIQALA VHGRTRADLY
TGDAEYDTIA AIKQAVSIPV FANGDITSPE KARAVLDATG VDGLLIGRAA QGRPWIFREI
EHYLRTGEHL PAPQLDEVER ILLEHLAALH AFYGDVMGVR IARKHVGWYL ATRPGGKEFR
SRFNALEDTQ AQCANVRAFF SERRQSLETE DGQGVAA
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