Gene PputGB1_4820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4820 
Symbol 
ID5872634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5387471 
End bp5389177 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content47% 
IMG OID641549958 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001671042 
Protein GI167035811 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.179735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCAA GATACCGTGC AGCGGTGGAT GCGGCAGCTA TTTTCTCGGA AACCGATAAA 
TCCGGAATAA TCACCTATGT CAATGAACAG TTCTGTGATA TTTCTGGCTA TAGCGCACAG
GAGTTGATTG GGCAAAACCA CCGCATACTA AACTCAGGGC AGCATCCCCC TGAGTTCTTT
ATTGATATGT GGAAAAAAGT TTCACGTGGG CAGGTATGGA AAGGTGAAAT TTGCAACCGT
AAAAAGGATG GCAGCCTGTA TTGGGTAGAG AGCACCATTG TACCCATGTA CGATGATGCC
AGCCAGCGGG TGCAGAAATA CGTTTCCATT CGTTTCGATG TGACCGAAAA GCGGAAGTTG
CTGGAAACCT TGCAATGGCA GGCTGAGCAC GACGAGCTGA CGGGTCTTCC AAATCGTTTT
TTGCTGTCCA AAGCGCTTGA TCAGGCTATT GTCAAAGCAA AGAGCCAGTC CAGCACGGTT
GCCGTGGGCG TGCTTGATCT CGATGGGTTT AAGCAGATTA ACGACCGCTA TGGCCACGAG
ATAGGTGATC GTCTGTTAGT GGCGGTGGCT GATCGCCTGA AACATAGTAT GCGTATCGAA
GATACCGTAG CCCGTTTGGG AGGCGATGAG TTCGTGCTGA TTTCGGGTGT GCGGGATCCC
AAGGTGTTGG AAAGCGCCCT GCAGAGGCTT TTAGCTGCCC TTTCCGCCGT CTACGTCATC
GATGGCATAG GCATTAATAT TTCCGCCAGT ATCGGTGTGA CGCTCTATCC AAACGATAAT
GAGAATGCCG ATACACTGCT GCGTCATGCC GATCAGGCTA TGTATAAGGC CAAACAAAGT
GGCCGTAACT GTTTCTATTT GTTTGATGTA TCAAAAGATA AGCTGATTAA ATCAGCTTTT
GATTCCGTAA TACGGGTTCG CCAAGCGTTA CATGATGGTG AGTTATGCTT GCATTATCAA
CCAAAAATAA GTTTGAGCAG TGGGGCAGTG ATTGGTTTTG AAGCACTATT GCGTTGGCAG
CATCCGCGAG ATGGACTTAT ATTACCGCAG TATTTTATAC CGTTGATTGA GCAGAGCGAT
CTGATCGTGG AGATCGGCGA GTGGGTCATA GATCAGGCGC TCAGTCAAAT AGAACAATGG
GCGGACTTGG GTCATTCGTG GTCTGTGAGT GTAAACATTG CAGCATTACA TTTGAAAAAA
GAAAACTTTG TAAAGTCCCT AAAGTTTTTG CTGGACAGCC ACCCTAATGT TTTGCCGCAG
ATGTTGGATA TTGAGATTAC CGAATCAGTG GTGATAGAAC ACTTATCACA TGTCACTCAG
TGCCTCATTG CTTGCCAGGA TCTGGGTGTG ACATTTTCGT TGGACGACTT TGGAACCGGG
TATTCATCGC TGAGCTACCT TAAACAACTG CCCACGCAGT CAATCAAGAT AGACAAATCT
TTTATACGCG ACATACTCAT CGATAAAGAC AGCTTGGGGC TGACTAAGGC GATCATCGGC
CTAGCGAAAT CGTTTAACCG CGAGGTTATT GCTGAAGGGG TGGAAACGGT TGAGCACGGA
GTGTTGCTGA TGAACCTAGG TTGTGATGTA GCGCAAGGCT ATGGTATTGC GAAACCCATG
CCGGTAGAAC AAGTGCCATC TTGGGTGGCG AAGTTTGTCC CTGCTCATTT ATCTAGAGGG
GTAATAGATA AACCGCACCG TCCATGA
 
Protein sequence
MSARYRAAVD AAAIFSETDK SGIITYVNEQ FCDISGYSAQ ELIGQNHRIL NSGQHPPEFF 
IDMWKKVSRG QVWKGEICNR KKDGSLYWVE STIVPMYDDA SQRVQKYVSI RFDVTEKRKL
LETLQWQAEH DELTGLPNRF LLSKALDQAI VKAKSQSSTV AVGVLDLDGF KQINDRYGHE
IGDRLLVAVA DRLKHSMRIE DTVARLGGDE FVLISGVRDP KVLESALQRL LAALSAVYVI
DGIGINISAS IGVTLYPNDN ENADTLLRHA DQAMYKAKQS GRNCFYLFDV SKDKLIKSAF
DSVIRVRQAL HDGELCLHYQ PKISLSSGAV IGFEALLRWQ HPRDGLILPQ YFIPLIEQSD
LIVEIGEWVI DQALSQIEQW ADLGHSWSVS VNIAALHLKK ENFVKSLKFL LDSHPNVLPQ
MLDIEITESV VIEHLSHVTQ CLIACQDLGV TFSLDDFGTG YSSLSYLKQL PTQSIKIDKS
FIRDILIDKD SLGLTKAIIG LAKSFNREVI AEGVETVEHG VLLMNLGCDV AQGYGIAKPM
PVEQVPSWVA KFVPAHLSRG VIDKPHRP