| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4701 |
|---|
| Symbol | |
|---|
| ID | 5872512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5253026 |
|---|
| End bp | 5254960 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549837 |
|---|
| Product | acetyl-CoA synthetase |
|---|
| Protein accession | YP_001670923 |
|---|
| Protein GI | 167035692 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02188] acetate--CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.120403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0122351 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATA TCCGCAACTA TCCCCAGGCT CTGGCCGTCA GCCAATCCGC CACCCCCACC
CCCGACGAAT ACCATCGCCT GTACCGCCAG TCGGTCGACG ATCCTGACAC CTTCTGGGCC
GAGCAGGCCA AACGCCTGGA CTGGATCAAG CCCTGGTCGA GCGTGCAGCA ATGCGACCTG
AATACCGGCA AGGCCCGCTG GTTCGACGGT GCACAGCTCA ACGTCAGCTA TAACTGCATC
GACCGCCATC TAGCCCAGCG CGGCGAGCAG ACGGCCCTGC TGTGGGAAGG TGACGACCCA
AAAGACTCCA AGGCCATCAC TTACCGCGAG CTGCACCGCC AGGTCTGCCG CCTGGCCAAT
GCAATGAAGG CGCGCGGGGT CAAGAAAGGC GACCGGGTGT GCATCTACAT GCCGATGATC
CCCGAAGCCG CCTTCGCCAT GCTCGCCTGC ACCCGCATCG GGGCCATACA TTCGGTAGTG
TTCGGCGGTT TTTCCCCCGA CGCCCTGCGC GACCGCATCC TCGACGCCGA CTGCCGCACC
GTGATCACCG CCGATGAGGG CGTGCGTGGC GGCAAGCGTG TCCCGCTGAA ACAGAACGTC
GACAAGGCCT TGGCCAGCTG CCCAGCGGTC AGCAGCGTGT TGGTGGTGCG CCGCACCGGC
GGCGATGTCG CCTGGGCCGA AGGCCGCGAC CTCTGGTACC ACGAAGTAAC GGAAAAGGCC
GGCGACGACT GCCCCCCCGA GCCGATGGCG GCCGAAGACC CCCTGTTCAT CCTCTATACC
TCCGGCAGCA CCGGCAAACC AAAAGGCGTG CTGCACACCA CCGGCGGCTA CCTGCTGCAA
GCGACAATGA CCTTCAAGGT AGTGTTCGAC TACCGTGACG GCGAGGTTTT CTGGTGCACT
GCCGATGTCG GCTGGGTTAC CGGCCACAGC TACATCGTCT ATGGCCCGCT GGCCAATGGC
GCCATCTCGC TGATGTTCGA AGGCGTACCC AACTACCCGG ACACTTCACG CTTCTGGCAG
GTGGTGGACA AGCACCAGGT AAACATTTTC TACACCGCCC CGACCGCCCT GCGCGCATTG
ATGCGCGAGG GCTCCGCGCC GCTGCAGGGC ACCTCGCGCA AGAGCCTGCG CTTGTTGGGC
AGCGTCGGCG AGCCGATCAA CCCTGAAGCC TGGGAATGGT ATTTCGAGGC GGTCGGGCAG
AAGCGCTGCC CCATTGTCGA TACCTGGTGG CAGACCGAAA CCGGCGGCAT CATGCTCACC
CCGCTGCCCG GCTCGCAGGC ACTCAAACCC GGTTGCGCCA CACAGCCCAT GTTTGGCGTG
CAACCGGCGC TACTGGACGA AAAAGGCAAA CTGATCGAAG GCCCCGGCGC TGGCCTTCTG
GTCATCAAGG CCAGCTGGCC CGGGCAGATC CGTAGCGTCT ATGGCGACCA TCAGCGCATG
GTCGACACCT ACTTCAAACC CATGCCCGGC TACTACTTCA CCGGCGACGG TGCCCGCCGC
GACGCCGATG GCGACTACTG GATCACCGGG CGCATCGACG ATGTGATCAA CGTGTCCGGG
CACCGCATAG GCACCGCCGA AGTAGAAAGC GCACTGGTGC TGCATGACAG CGTCGCCGAG
GCAGCCGTGG TCGGTTACCC CCACGACCTC AAGGGCCAGG GCGTCTACGC CTTCGTCACG
ACCATGAATG GCGTGACGCC AGACGACACG CTAAAGGCCG AGCTGCTGGC ACTGGTAAGC
AAGGAAATCG GCAGTTTCGC CAAACCCGAG CTGATTCAGT GGGCGCCGGC GCTACCCAAG
ACGCGCTCAG GCAAGATCAT GCGGCGTATA CTGCGCAAAA TCGCCTGCAA CGAGCTGGAC
AACCTGGGCG ATACCTCGAC CCTTGCCGAC CCCAGCGTGG TACAGGGCCT GATCGACAAA
CGCCTTAACC AGTAA
|
|---|
| Protein sequence | MFDIRNYPQA LAVSQSATPT PDEYHRLYRQ SVDDPDTFWA EQAKRLDWIK PWSSVQQCDL
NTGKARWFDG AQLNVSYNCI DRHLAQRGEQ TALLWEGDDP KDSKAITYRE LHRQVCRLAN
AMKARGVKKG DRVCIYMPMI PEAAFAMLAC TRIGAIHSVV FGGFSPDALR DRILDADCRT
VITADEGVRG GKRVPLKQNV DKALASCPAV SSVLVVRRTG GDVAWAEGRD LWYHEVTEKA
GDDCPPEPMA AEDPLFILYT SGSTGKPKGV LHTTGGYLLQ ATMTFKVVFD YRDGEVFWCT
ADVGWVTGHS YIVYGPLANG AISLMFEGVP NYPDTSRFWQ VVDKHQVNIF YTAPTALRAL
MREGSAPLQG TSRKSLRLLG SVGEPINPEA WEWYFEAVGQ KRCPIVDTWW QTETGGIMLT
PLPGSQALKP GCATQPMFGV QPALLDEKGK LIEGPGAGLL VIKASWPGQI RSVYGDHQRM
VDTYFKPMPG YYFTGDGARR DADGDYWITG RIDDVINVSG HRIGTAEVES ALVLHDSVAE
AAVVGYPHDL KGQGVYAFVT TMNGVTPDDT LKAELLALVS KEIGSFAKPE LIQWAPALPK
TRSGKIMRRI LRKIACNELD NLGDTSTLAD PSVVQGLIDK RLNQ
|
|---|
| |