| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4681 |
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| Symbol | |
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| ID | 5872492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5229553 |
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| End bp | 5231874 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549817 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_001670903 |
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| Protein GI | 167035672 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0467702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000000000605496 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCGAA CTCGAAATCC CCGCACCCCT CAGAAACGCC CGACCGGCCG CTCCCGCGCC
TGGCTGGGCT GGGCTTTGAA GCTCAGCCTG GTAGGCCTGG TGATCGTTGC CGGCTTCGCG
GTTTACCTCG ATGCCGTCGT CCAGGAGAAG TTCTCCGGCA AGCGCTGGAC CATCCCGGCC
AAGGTGTATG CCCGGCCGCT GGAGTTGTTC ACCGGCCAGA AACTGAGCAA GAACGACTTC
CTCACCGAGC TCGATGCACT CGGCTACCGA CGCGAAAGCG CGGCCAACGG CCCAGGGGCG
GCGGCGGTCA ACGGCAATAC CGTCGATCTC AATACCCGTG GCTTCCAGTT CTACGAGGGC
ATGGAGCCGG CGCAGTTCGT TCGCGTGCGT TTCTCAGGGG ATTACGTGGC GGGCCTTTCT
GCTGCCAATG GCAAGGCGCT TGACGTTGTG CGCCTGGAGC CGCTGATGAT CGGCGGCATC
TACCCGAAGA ACCTTGAAGA CCGCATCTTG ATCAAGATCG ACCAGGTCCC CAAATACCTG
CTCGAAACCC TGGTGGCGAC GGAGGACCGC GACTTCTACA GCCACTACGG TGTGTCGCCC
AAGTCCATCG CCCGGGCCAT GTGGGTCAAC ACGTCGTCCG GCTCGATGCG CCAGGGCGGC
AGTACCCTGA CCCAGCAGTT GGTGAAGAAC TTCTACCTCA GCAGCGAGCG CAGCCTCAGC
CGCAAGCTGA CCGAGGCGAT GATGGCGATG CTGCTCGAAC TGCACTACGA CAAGCGTGAA
ATCCTCGAGG CGTACCTCAA CGAGGTGTTC GTTGGCCAGG ACGGTCAGCG TGCCGTGCAC
GGCTTTGGCC TGGCCAGTCA GTTCTTCTTC AGCCAACCAC TGTCGGAGTT GAAACTGCAC
CAGATCGCCC TGCTGGTGGG CATGGTCAAA GGCCCGTCCT ACTACAACCC GCGGCGTTAC
CCTGATCGCG CCCTGGCTCG GCGCAACCTG GTGCTCGACC TGGTGGCCGA GCAGGGCGTG
GCCAGCCAGG CGGAAGTCGA TGCAGCGAAG AAGATGCCGC TGGGTGTGAC CAAGCGCGGC
AGCCTGGCCG ACAGCTCGTT CCCGGCCTTC CTCGACCTGG TCAAGCGTCA ATTGCGCCAG
GACTACCGCG ACGAAGACTT GACCGAAGAA GGTCTGCGCA TTTTCACCAG TTTCGACCCG
ATCCTGCAGA TGAAGGCCGA AACCTCGATG AGCGAGACCT TCAAGCGCCT GGCGGGCCGC
AAGGGTGCCG ACGAAGTGGA GTCGGCAATG GTGGTGACCA ACCCTGAGAC GGGTGAAGTG
CAGGCACTCA TCGGCAGCCG TCAGGCAGGT TTTGCCGGCT TCAACCGGGC GATCGACGCC
GTGCGGCCGA TCGGCTCGCT GGTCAAGCCG TCCGTGTACC TGACAGCGCT GGAGCAGCCA
AGCAAATACA CCCTCACCAG CTGGGTGCAG GACGAGCCAT TCTCGGTCAA GGGCGCCGAC
GGCCAGGTCT GGCGCCCACA AAACTACGAC CGTCGCCCGC ATGGCACCAT CTACCTGTAC
CAGGGGCTGG CCAACTCGTA CAACCTGTCT ACCGCCAAGC TCGGGCTGGA AGTGGGTGTG
CCCAATGTGA TCAAGACCAT TGGCCGGTTG GGGGTGAATG TCGACTGGCC AGCGTTCCCG
GCCATGCTGC TGGGGGCCGG CGGCATGTCG CCGATGCAGG TCGCGACCAT GTACCAGACC
ATCGCCAACG GCGGCTTCAA CACCCCGATG CGCGGCATCC GCAGTGTGCT TACCGCTGAG
GGCGAGCCGC TCAAGCGCTA CCCGTTCCAG ATCCAGCAAA CCTTCGACCC GGGTGCCATC
TACCTGGTGC AGAACGCCAT GCAACGGGTA ATGCGCGAAG GTACCGGGCG CTCGGTGTAC
AACACCTTGC CACGTTCGCT GACCCTGGCG GGCAAGACCG GCACCAGTAA CGATTCGCGT
GACAGCTGGT TCTCCGGCTT CAGCCAAGAC CTGCTGGCCG TGGTGTGGAT GGGGCGTGAC
GATAACGGCA AAACGCCATT TACCGGCGCC ACCGGTGCCC TGCAGGTGTG GACCAGCTTC
ATGAAGAAAG CCGACCCGCT GCCGCTGGAC ATGCCGCAAC CGGACAACGT GGTGCAGGCC
TGGATCGACC CCTACACGGG CCGTGGGTCT GATGGCAGCT GTCCGGGAGC AGTGCAGATG
CCGTATATTC GCGGCAGTGA ACCGCCCGCC GGCGCGACCT GTGGCGGCGA GGAGAATCCT
GCCGAGTCGG TCATGGACTG GGTCAAGGGC TGGATGAATT AA
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| Protein sequence | MTRTRNPRTP QKRPTGRSRA WLGWALKLSL VGLVIVAGFA VYLDAVVQEK FSGKRWTIPA
KVYARPLELF TGQKLSKNDF LTELDALGYR RESAANGPGA AAVNGNTVDL NTRGFQFYEG
MEPAQFVRVR FSGDYVAGLS AANGKALDVV RLEPLMIGGI YPKNLEDRIL IKIDQVPKYL
LETLVATEDR DFYSHYGVSP KSIARAMWVN TSSGSMRQGG STLTQQLVKN FYLSSERSLS
RKLTEAMMAM LLELHYDKRE ILEAYLNEVF VGQDGQRAVH GFGLASQFFF SQPLSELKLH
QIALLVGMVK GPSYYNPRRY PDRALARRNL VLDLVAEQGV ASQAEVDAAK KMPLGVTKRG
SLADSSFPAF LDLVKRQLRQ DYRDEDLTEE GLRIFTSFDP ILQMKAETSM SETFKRLAGR
KGADEVESAM VVTNPETGEV QALIGSRQAG FAGFNRAIDA VRPIGSLVKP SVYLTALEQP
SKYTLTSWVQ DEPFSVKGAD GQVWRPQNYD RRPHGTIYLY QGLANSYNLS TAKLGLEVGV
PNVIKTIGRL GVNVDWPAFP AMLLGAGGMS PMQVATMYQT IANGGFNTPM RGIRSVLTAE
GEPLKRYPFQ IQQTFDPGAI YLVQNAMQRV MREGTGRSVY NTLPRSLTLA GKTGTSNDSR
DSWFSGFSQD LLAVVWMGRD DNGKTPFTGA TGALQVWTSF MKKADPLPLD MPQPDNVVQA
WIDPYTGRGS DGSCPGAVQM PYIRGSEPPA GATCGGEENP AESVMDWVKG WMN
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