| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4454 |
|---|
| Symbol | |
|---|
| ID | 5872262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4987795 |
|---|
| End bp | 4989318 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641549589 |
|---|
| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
|---|
| Protein accession | YP_001670678 |
|---|
| Protein GI | 167035447 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00115261 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGA TCAAGCAAGA CGACCTGATT CAGAGCGTCG CCGACGCCCT GCAATTCATC
TCGTACTACC ACCCCGTCGA TTTCATCCAG GCCATGCACG AGGCCTATCT GCGTGAAGAG
TCGCCTGCTG CACGCGATTC CATCGCCCAG ATCCTGATCA ACTCGCGCAT GTGCGCCACC
GGCCACCGCC CGATCTGCCA GGACACCGGT ATCGTCACCG TGTTCGTGCG CGTGGGCATG
GACGTACGCT GGGACGGCGC CACCCTGAGC GTCGACGACA TGATCAACGA AGGTGTGCGT
CGCGCCTACA ACCTGCCTGA AAACGTCCTG CGCGCCTCGA TCCTGGCCGA CCCGGCCGGT
GCTCGCAAGA ACACCAAGGA CAACACCCCG GCAGTGATCC ACTACTCCAT CGTCCCCGGC
GACAAGGTCG AGGTCGATGT CGCAGCCAAG GGCGGCGGCT CGGAGAACAA GTCGAAGATG
GCCATGCTCA ACCCGTCCGA CTCGATCGTC GACTGGGTGC TGAAGACCGT GCCGACCATG
GGCGCTGGCT GGTGCCCGCC TGGCATGCTC GGCATCGGCA TCGGCGGTAC CGCCGAGAAA
GCCGCAGTAA TGGCCAAGGA AGTGTTGATG GAGTCCATCG ACATCCATGA GCTGAAAGCC
CGCGGCCCGC AAAACCGCCT GGAAGAAATC CGTCTGGAGC TGTTCGAGAA GGTCAACCAG
CTGGGCATCG GCGCCCAGGG CCTGGGTGGC CTGACCACCG TGCTCGACGT CAAGATCATG
GACTACCCGA CCCACGCCGC CTCCCTGCCG GTGTGCATGA TCCCCAACTG CGCCGCCACC
CGCCACGCCC ACTTCGTGCT CGATGGCTCC GGCCCGGCAG AACTGGAAGC GCCGTCGCTG
GATGCCTACC CGGAAATCGT CTGGGAAGCT GGCCCGAGCG CCCGTCGCGT CAACCTCGAC
GACATCACCC CGGAAGAAGT CGCCAGCTGG AAGCCGGGCG AAACCATCCT GCTCAACGGC
AAGATGCTGA CCGGCCGCGA TGCCGCGCAC AAGCGCATGG TTGAAATGCT CAACCGTGGC
GAAGAACTGC CAGTCGACCT GAAAGGCCGC TTCATCTACT ACGTAGGCCC GGTCGACCCG
GTCGGTGACG AAGTGGTAGG CCCAGCCGGC CCGACCACCG CCACTCGCAT GGACAAGTTC
ACCCGCCAGA TCCTCGAGCA GACCGGCCTG CTGGGCATGA TCGGCAAGTC CGAGCGTGGC
CCGACCGCCA TCGAGGCGAT CAAGGACAAC AAGGCCGTGT ACCTGATGGC CGTTGGCGGT
GCTGCCTACC TGGTAGCCCA GGCCATCCGC AAGTCGAAGG TACTGGCCTT CGCCGAGCTG
GGCATGGAAG CGATCTACGA GTTCGAGGTC AAGGACATGC CGGTTACCGT CGCCGTCGAT
AGCAACGGTG AGTCGGTACA CATCACTGGC CCTGCCCTGT GGCAGAGCAA GATTGCCCAA
AGCCTGGCAG TCGAAGTGAA GTAA
|
|---|
| Protein sequence | MTVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSIAQ ILINSRMCAT
GHRPICQDTG IVTVFVRVGM DVRWDGATLS VDDMINEGVR RAYNLPENVL RASILADPAG
ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM
GAGWCPPGML GIGIGGTAEK AAVMAKEVLM ESIDIHELKA RGPQNRLEEI RLELFEKVNQ
LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGS GPAELEAPSL
DAYPEIVWEA GPSARRVNLD DITPEEVASW KPGETILLNG KMLTGRDAAH KRMVEMLNRG
EELPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG
PTAIEAIKDN KAVYLMAVGG AAYLVAQAIR KSKVLAFAEL GMEAIYEFEV KDMPVTVAVD
SNGESVHITG PALWQSKIAQ SLAVEVK
|
|---|
| |