| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4428 |
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| Symbol | |
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| ID | 5872236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4955753 |
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| End bp | 4958905 |
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| Gene Length | 3153 bp |
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| Protein Length | 1050 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641549563 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001670652 |
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| Protein GI | 167035421 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.391889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.149359 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAGT TCTTTATCGA TCGCCCGATC TTCGCCTGGG TGATCGCCTT GGTGATCATG
CTGGTCGGGG CCTTGTCGAT CCTGAAGTTG CCGATCAACC AGTACCCCAG CATCGCACCG
CCGGCCATCG CCATCGCCGT GACCTACCCG GGCGCCTCGG CGCAAACCGT GCAGGACACC
GTAGTGCAGG TGATCGAGCA GCAGCTCAAC GGTATCGACA ACCTGCGTTA TGTGTCGTCG
GAAAGTAACT CCGACGGCAG CATGACCATT ACCGCCACCT TCGAACAGGG CACCAACCCT
GACACCGCCC AGGTTCAGGT ACAGAACAAG CTGAACCTGG CCACCCCACT GCTGCCACAA
GAAGTGCAAC AGCAAGGTAT CCGCGTCACC AAGGCTGTGA AGAACTTCCT GCTGGTGATC
GGCCTGGTGT CCGAAGACGG CAGCATGACC AAGGATGACT TGGCCAACTA CATCGTCTCC
AACATGCAGG ACCCGATCTC GCGTACAGCG GGTGTGGGTG ACTTCCAGGT GTTCGGCGCA
CAGTACGCCA TGCGTATCTG GCTCGACCCG GCCAAGCTGA ACAAATTCCA GCTGACCCCG
GTCGACGTCA AGACCGCCGT GGCCGCGCAG AACGTGCAGG TGTCCTCCGG CCAGCTCGGC
GGCCTGCCGG CCATGCCGGG CACCCAGCTG AACGCCACCA TCATCGGCAA GACCCGCCTG
CAAACCGCCG AGCAGTTCGA GAAGATCCTG CTCAAGGTCA ACAACGACGG TTCGCAGGTG
CGTCTGGGTG ATGTCGCCCA GGTAGGCCTG GGGGGTGAAA ACTACGCGGT CAGCGCTCAG
TTCAACGGCA AGCCGGCTTC CGGCCTGGCA GTAAAACTGG CTACCGGCGC CAACGCCCTG
GACACCGCCA AGGCACTGCG CGAGACCATC AAAGGCCTGG AACCGTTCTT CCCGCCTGGG
GTGAAAGCGG TATTCCCGTA TGACACCACT CCGGTGGTCA CCGAATCGAT CAGCGGCGTG
ATCCACACCC TGATCGAAGC CGTGGTCCTG GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CTACCATCAT CACCACCATG ACCGTACCGG TGGTGTTGCT GGGTACCTTC
GGCATCCTTG CCGCCGCGGG CTTCAGCATC AACACCCTGA CCATGTTCGC CATGGTCCTG
GCCATCGGTT TGCTGGTGGA CGACGCCATC GTCGTGGTGG AAAACGTCGA GCGGGTGATG
TCCGAGGAAG GCTTGCCGCC CAAGGAAGCC ACCAAGCGTT CGATGGAACA GATCCAGGGT
GCCCTGGTGG GTATCGCCCT GGTGCTGTCG GCCGTACTGC TGCCGATGGC GTTCTTCGGC
GGTTCCACGG GTGTGATCTA CCGGCAGTTC TCCATCACCA TCGTCTCGGC CATGGGCCTG
TCGGTGCTGG TTGCGCTTAT CTTCACCCCG GCGCTTTGCG CCACCATGCT CAAGCCGCTG
AAGAAGGGCG AGCACCACAC TGCCAAAGGC GGCTTCTTCG GTTGGTTCAA CCGCAACTTC
GACCGCAGCG TGAACGGCTA CGAGCGCAGC GTGGGCACTA TCCTGCGCAA CAAGGTGCCG
TTCCTGCTGG CCTATGCGCT GATCGTGGTC GGCATGATCT GGCTGTTCGC TCGCATCCCA
ACCGCGTTCC TGCCCGAGGA AGACCAGGGC GTGCTGTTCG CCCAGGTGCA AACCCCGGCA
GGCTCCAGTG CCGAGCGCAC CCAGGTGGTG GTCGACCAGA TGCGTGAGTA TCTGTTGAAG
GATGAAGCCG ACACCGTAGC GTCCGTGTTC ACCGTCAACG GCTTCAACTT TGCCGGTCGC
GGGCAGAGTT CGGGCATGGC ATTCATCATG CTCAAACCCT GGGATGAACG TTCCAAGGAG
AACAGCGTGT TCGCCCTGGC CCAGCGTGCC CAGCAGCACT TCTTCACCTT CCGTGATGCA
ATGGTGTTCG CCTTCGCCCC ACCTGCGGTA CTCGAACTGG GTAACGCCAC CGGTTTCGAC
GTGTTCCTGC AGGACCGCGG TGGTGTCGGC CACGAGAAGT TGATGGAAGC GCGCAACCAG
TTCCTGGCCA AGGCCGCGCA GAGCAAGATC CTCAGCGCTG TGCGCCCTAA CGGCCTGAAC
GATGAACCGC AGTACCAGTT GACCATCGAT GACGAGCGTG CCAGCGCCCT GGGCGTGACC
ATTGCCGACA TCAACAACAC CCTGTCGATT GCCCTGGGTG CCAGCTACGT CAACGACTTC
ATCGACCGTG GCCGAGTCAA GAAGGTGTAC ATCCAGGGCG AACCCAACGC CCGAATGAGC
CCTGAAGACC TGCAGAAGTG GTACGTGCGC AACGGCAAAG GCGAGATGGT GCCGTTCTCC
TCCTTCGCCA AAGGCGAATG GACCTACGGC TCGCCGAAAC TGTCGCGTTA CAACGGCGTC
GAGGCGATGG AAATCCTCGG TGCGCCGGCG CCGGGCTACA GTACCGGTGA AGCCATGGCC
GAGGTCGAGC GCATCGCTGG CGAACTGCCA AGCGGCGTAG GCTTCTCCTG GACCGGCATG
TCCTACGAGG AAAAGCTCTC CGGTTCGCAG ATGCCGGCGC TGTTCGCCCT CTCGGTACTG
TTCGTGTTCC TGTGCCTGGC AGCCCTGTAC GAAAGCTGGT CGATCCCGAT CGCCGTGGTA
CTGGTAGTAC CGCTGGGTAT CATCGGTGCA CTGATCGCCA CCAGTCTGCG CGGCTTGTCC
AACGACGTGT ACTTCCTGGT CGGCCTGTTG ACCACCATCG GCCTGGCGGC GAAAAACGCC
ATTCTGATCG TCGAGTTCGC CAAGGAACTG CACGAGCAAG GCCGCAGCCT GTACGACGCG
GCGATCGAGG CGTGCCGCAT GCGTCTGCGC CCGATCATCA TGACCTCGCT GGCGTTCATC
CTTGGCGTGG TACCGTTGAC CATCGCCAGC GGCGCCGGCG CCGGCAGCCA GCACGCCATC
GGTACGGGTG TGATCGGCGG CATGATCAGT GCGACCGTAC TGGCTATCTT CTGGGTACCG
CTGTTCTTCG TCGCAGTGTC GTCGCTGTTC GGCAGCAAAG AGCCGGAAAA AGACGTCACC
CCTGAAACTC CACGTTATGA GGCTGGGCAA TGA
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| Protein sequence | MSKFFIDRPI FAWVIALVIM LVGALSILKL PINQYPSIAP PAIAIAVTYP GASAQTVQDT
VVQVIEQQLN GIDNLRYVSS ESNSDGSMTI TATFEQGTNP DTAQVQVQNK LNLATPLLPQ
EVQQQGIRVT KAVKNFLLVI GLVSEDGSMT KDDLANYIVS NMQDPISRTA GVGDFQVFGA
QYAMRIWLDP AKLNKFQLTP VDVKTAVAAQ NVQVSSGQLG GLPAMPGTQL NATIIGKTRL
QTAEQFEKIL LKVNNDGSQV RLGDVAQVGL GGENYAVSAQ FNGKPASGLA VKLATGANAL
DTAKALRETI KGLEPFFPPG VKAVFPYDTT PVVTESISGV IHTLIEAVVL VFLVMYLFLQ
NFRATIITTM TVPVVLLGTF GILAAAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLPPKEA TKRSMEQIQG ALVGIALVLS AVLLPMAFFG GSTGVIYRQF SITIVSAMGL
SVLVALIFTP ALCATMLKPL KKGEHHTAKG GFFGWFNRNF DRSVNGYERS VGTILRNKVP
FLLAYALIVV GMIWLFARIP TAFLPEEDQG VLFAQVQTPA GSSAERTQVV VDQMREYLLK
DEADTVASVF TVNGFNFAGR GQSSGMAFIM LKPWDERSKE NSVFALAQRA QQHFFTFRDA
MVFAFAPPAV LELGNATGFD VFLQDRGGVG HEKLMEARNQ FLAKAAQSKI LSAVRPNGLN
DEPQYQLTID DERASALGVT IADINNTLSI ALGASYVNDF IDRGRVKKVY IQGEPNARMS
PEDLQKWYVR NGKGEMVPFS SFAKGEWTYG SPKLSRYNGV EAMEILGAPA PGYSTGEAMA
EVERIAGELP SGVGFSWTGM SYEEKLSGSQ MPALFALSVL FVFLCLAALY ESWSIPIAVV
LVVPLGIIGA LIATSLRGLS NDVYFLVGLL TTIGLAAKNA ILIVEFAKEL HEQGRSLYDA
AIEACRMRLR PIIMTSLAFI LGVVPLTIAS GAGAGSQHAI GTGVIGGMIS ATVLAIFWVP
LFFVAVSSLF GSKEPEKDVT PETPRYEAGQ
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