| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4427 |
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| Symbol | |
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| ID | 5872235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4954595 |
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| End bp | 4955749 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549562 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001670651 |
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| Protein GI | 167035420 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.123796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTCA AGCCAGCCGT TACCGCTCTG GTTTCCGCCG TCGCCCTGGC AACCCTGCTC
AGTGGCTGCA AGAAAGAAGA AGCAGCGCCA GCGGCGCAGG CTCCTCAGGT CGGCGTCGTG
ACCATCCAGC CCCAAGCCTT CACCCTGACC TCGGAATTGC CGGGGCGTAC CACTGCCTAC
CGCGTCGCCG AGGTGCGCCC GCAGGTCAAC GGCATCATCC TCAAGCGCCT GTTCAAGGAA
GGCAGCGACG TCAAGGAAGG CCAGCAGCTG TACCAGATCG ACCCTGCCGT GTACGAAGCC
ACCCTGGCCA ATGCCCAGGC CAACCTGCAG GCTACCCGCT CACTGGCCGA GCGCTACAAG
CAGCTGATTG ACGAGCAAGC CGTCTCCAAA CAGGAATACG ACGACGCCAA TGCCAAACGA
TTGCAGGCCG AGGCTTCGCT CAAGAGCGCC CAGATCGACC TGCGCTACAC CAAGGTTCTG
GCACCGATCA GCGGCCGTAT CGGTCGTTCT TCGTTCACCG AAGGTGCACT GGTGAGCAAC
GGCCAGACCA ACGCCATGGC CACCATCCAG CAACTCGACC CGATCTACGT CGACGTTACC
CAGTCCACCG CCGAGCTGCT CAAGCTGCGC CGTGACCTGG AGAGCGGCCA GTTGCAGAAG
GCCGGCGACA ACGCCGCCTC GGTTCAGCTG GTGCTGGAAG ACGGCAGCCT GTTCAAGCAG
GAAGGTCGCC TGGAGTTCTC CGAAGTCGCG GTCGACGAAA CCACCGGCTC GGTCACCCTG
CGCGCCCTGT TCCCCAACCC TGACCACACC CTGCTGCCAG GCATGTTCGT GCATGCGCGG
CTGAAGGCCG GGGTCAACGC CAACGCCATC CTGGCGCCGC AACAAGGCGT GACCCGCGAC
CTGAAAGGCG CGCCGACCGC ACTGGTGGTC AACCAGGAAA ACAAGGTCGA ACTGCGTCAG
TTGAAGGCCA ACCGTACCCT GGGCAGCGAC TGGCTGATCG AAGAAGGCCT CAACCCAGGT
GACCGCCTGA TTACCGAAGG GCTGCAGTAC GTGCGCCCAG GTGTCGAGGT GAAGGTCAGC
GAAGCCACCA ACGTCCAGAA GCCGGCCAGC CCTGATCAGG CCAACGCGGC AAAAGCAGAC
GCCAAAGCGG AGTAA
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| Protein sequence | MQFKPAVTAL VSAVALATLL SGCKKEEAAP AAQAPQVGVV TIQPQAFTLT SELPGRTTAY
RVAEVRPQVN GIILKRLFKE GSDVKEGQQL YQIDPAVYEA TLANAQANLQ ATRSLAERYK
QLIDEQAVSK QEYDDANAKR LQAEASLKSA QIDLRYTKVL APISGRIGRS SFTEGALVSN
GQTNAMATIQ QLDPIYVDVT QSTAELLKLR RDLESGQLQK AGDNAASVQL VLEDGSLFKQ
EGRLEFSEVA VDETTGSVTL RALFPNPDHT LLPGMFVHAR LKAGVNANAI LAPQQGVTRD
LKGAPTALVV NQENKVELRQ LKANRTLGSD WLIEEGLNPG DRLITEGLQY VRPGVEVKVS
EATNVQKPAS PDQANAAKAD AKAE
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