Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4425 |
Symbol | |
ID | 5872233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4952168 |
End bp | 4953619 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641549560 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001670649 |
Protein GI | 167035418 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.146647 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.357206 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTGCTG CCCTGCCCCC CACCACCCTG CGCAACGTGC TCACTGCCCT GATGCTGGCC ATCTTCCTCG GCGCACTGGA CCAGACCATC GTCGCCGTCT CGCTGCCGGC CATCTCGGCC CAGTTCAACG ACGTCGGCCT GCTGGCCTGG GTGATCTCCG GGTACATGGT GGCAATGACC GTGGCCGTAC CAATCTACGG CAAGCTGGGC GACCTTTACG GCCGGCGCCG GATGATCCTC ACCGGGATCA GCTTGTTCAC CCTGGCCTCG ATTGCCTGTG CCATGGCCCA GGACATGCAG CAGTTGGTGC TGGCCCGGGT ACTCCAGGGC ATTGGCGCGG GCGGTATGGT CTCGGTGAGC CAGGCGATCA TCGGCGACTT CGTACCGCCG CGTGAACGCG GCCGCTACCA GGGCTATTTC AGCAGCATGT ACGCCGTGGC CAGCGTCGCC GGGCCAGTGC TGGGCGGCTG GCTGACCGAG TACTTGTCGT GGCGCTGGGT ATTCTGGATC AACCTGCCGC TGGGGCTGGT CGCCTTGTGG GCCATACGCC GCGCCCTCGC CAGCATGCCG GTGCAGCGTC GCGAGGCCCA GGTCGACTAC CTTGGCGCCG TGCTGTTGAT CCTCGGCCTT GGCAGCCTGC TGCTGGGGAT CACCTTGGTC GGCCAGGGCC ACGCCTGGGC CGACCCGGCC GTGCTGGCGC TGTTCGCCTG CGCCCTACTC GGCCTGGCGT TGTTCATCGC CCACGAGCGC CGCTGCCCAG AGCCGCTGCT GCCGCTCGGG CTGTTCGGCA ACCGGGTGGC GGTACTTTGC TGGGGGGTGA TCTTCTTCGC CAGCTTCCAG TCGATTTCCC TGACCATGCT CATGCCCTTG CGCTACCAGG GCATCACTGG CGCCGGTGCC GACAGCGCTG CCCTGCACCT GCTGCCACTG GCCATGGGGT TGCCCATGGG GGCCTTTACA GGCGGGCGCA TGACCAGCCG GACCGGGCGC TACAAGCCGC AGATCCTGGC CGGTGCGCTG CTGATGCCAG TGGCCATTTT CGCCATGGCA CTGACGCCGC CGCAGTCAAC GTTGCTCAGT GCACTGTTCA TGCTGCTGAC CGGCATTGCT TGCGGGCTGC AGTTTCCGAC CTCGCTGGTG GGCACGCAAA GCGCGGTGGC CAGCAAGGAC ATTGGCGTGG CCACCAGCAC CACCAACCTG TTCCGCTCGC TGGGCGGGGC CATGGGCGTG GCGTGCATGT CCAGCCTGTT GCTGGCACTG CTGCACCAAG GTGGTTTCGA ATTGCTGGGT AACCCGTTGC TGGGGAGCCT GAAGGCCGGT GAAGTGGACC TGGTGACACA GGGACGCTTG CTGGAGACAT TCCGGCAGTT GCTGATGGGC AGCGCGCTGA TTGCGGTACT GGGGCTTTTT GCCGCATTGG CGTTGCCTGA CAGACAACTG CGCGGGTACT AA
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Protein sequence | MTAALPPTTL RNVLTALMLA IFLGALDQTI VAVSLPAISA QFNDVGLLAW VISGYMVAMT VAVPIYGKLG DLYGRRRMIL TGISLFTLAS IACAMAQDMQ QLVLARVLQG IGAGGMVSVS QAIIGDFVPP RERGRYQGYF SSMYAVASVA GPVLGGWLTE YLSWRWVFWI NLPLGLVALW AIRRALASMP VQRREAQVDY LGAVLLILGL GSLLLGITLV GQGHAWADPA VLALFACALL GLALFIAHER RCPEPLLPLG LFGNRVAVLC WGVIFFASFQ SISLTMLMPL RYQGITGAGA DSAALHLLPL AMGLPMGAFT GGRMTSRTGR YKPQILAGAL LMPVAIFAMA LTPPQSTLLS ALFMLLTGIA CGLQFPTSLV GTQSAVASKD IGVATSTTNL FRSLGGAMGV ACMSSLLLAL LHQGGFELLG NPLLGSLKAG EVDLVTQGRL LETFRQLLMG SALIAVLGLF AALALPDRQL RGY
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