| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4376 |
|---|
| Symbol | |
|---|
| ID | 5872183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4900172 |
|---|
| End bp | 4901962 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641549510 |
|---|
| Product | GTP-binding protein LepA |
|---|
| Protein accession | YP_001670600 |
|---|
| Protein GI | 167035369 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0481] Membrane GTPase LepA |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.251033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCATA TCCGCAATTT CTCCATCATC GCCCACATCG ACCATGGCAA GTCGACGCTG
GCCGACCGTT TCATCCAGAT GTGCGGTGGC CTGTCGGCAC GCGAAATGGA AGCCCAGGTG
CTCGATTCCA TGGACCTGGA GCGTGAGCGC GGTATCACCA TCAAGGCCCA CAGCGTCACG
CTTCACTACA AGGCGCAAGA CGGCAAAACC TACCAGCTGA ACTTCATCGA CACCCCCGGT
CACGTCGACT TCACCTACGA AGTCTCGCGC TCGCTGGCGG CCTGTGAAGG TGCACTGCTG
GTGGTCGATG CTGGCCAGGG CGTTGAAGCC CAGTCCGTGG CCAACTGCTA CACCGCCATC
GAGCAGGGCC TGGAAGTCAT GCCGGTCCTG AACAAGATGG ACCTGCCCCA GGCCGACCCG
GACCGCGTCA AGGACGAGAT CGAGAAGATC ATCGGTATCG ACGCTACCGA CGCCGTGGCC
TGCAGCGCCA AGAGCGGCAT GGGCGTGGAC GAGGTGCTCG AGCGCCTGGT GCACACCATC
CCAGCGCCGG AAGGCGAAAT CGATGCACCG CTGCAAGCGC TGATCATCGA CTCCTGGTTC
GACAACTACC TGGGCGTGGT CTCGCTGGTG CGCGTGCGCC ATGGCCGTGT AAAGAAAGGC
GACAAGATTC TGGTCAAGTC CACCGGCAAG GTGCACCTGG TCGACAGCGT CGGTGTATTC
ACCCCGAAAC ACACCCAGAC CGCAGATCTG AAAGCCGGTG AAGTGGGCTT CATCATCGCC
AGCATCAAGG ACATTCATGG TGCGCCGGTG GGTGACACCC TGACCCTGTC GTCGACCCCT
GAGGTCGAAG TGCTGGCTGG TTTCAAGAAA ATCCAGCCAC AGGTTTACGC CGGCCTGTTC
CCGGTCAGCT CCGACGACTT CGAGGATTTC CGCGATGCAC TGCAGAAGCT GACCCTGAAC
GACTCGTCCT TGCAGTACAT GCCGGAAAGC TCCGACGCAC TGGGCTTCGG CTTCCGTTGC
GGCTTCCTGG GCATGCTGCA CATGGAGATC ATCCAGGAGC GCCTGGAGCG CGAATACGAC
CTGGACCTGA TCACCACGGC GCCGAGCGTG ATCTACGAGC TCGAGCTCAA GACCGGCGAA
ACCATCGTCG TCGACAACCC GTCGAAGCTG CCGGATGTCT CGTCCGTCAC CGACTTCCGC
GAGCCGATCG TCACCGCGAC CATCCTGGTG CCGCAGGAGC ACCTGGGCAA CGTCATCACC
CTGTGCATCG AGAAGCGTGG CGTTCAGCGC GACATGCAGT TCCTCGGCAG CCAGGTGCAG
GTGCGTTACG ACATGCCGAT GAACGAAGTG GTGCTCGACT TCTTCGACCG TCTCAAGTCC
ACCAGCCGCG GCTATGCTTC GCTGGACTAT CATTTCGATC GCTACCAGTC GGCCAACCTG
GTCAAGCTGG ACGTACTGAT CAACGGCGAC AAGGTCGATG CCTTGGCATT GATCGTGCAC
CGTGACAACG CGGCCTACAA AGGCCGAGCG TTGACCGAGA AGATGAAGGA ACTGATCCCT
CGGCAGATGT TCGACGTGGC GATCCAGGCA GCCATTGGCG GCCAGATCAT TGCGCGGACA
ACCGTCAAGG CGCTCAGAAA GAACGTACTG GCCAAGTGCT ACGGTGGTGA CGTCAGCCGT
AAGAAGAAAC TGCTGGAGAA GCAGAAGGCC GGTAAGAAAC GCATGAAACA GGTGGGCAAC
GTGGAGATTC CACAAGAAGC CTTCCTCGCC GTGCTCAGGT TGGATAGCTA G
|
|---|
| Protein sequence | MSHIRNFSII AHIDHGKSTL ADRFIQMCGG LSAREMEAQV LDSMDLERER GITIKAHSVT
LHYKAQDGKT YQLNFIDTPG HVDFTYEVSR SLAACEGALL VVDAGQGVEA QSVANCYTAI
EQGLEVMPVL NKMDLPQADP DRVKDEIEKI IGIDATDAVA CSAKSGMGVD EVLERLVHTI
PAPEGEIDAP LQALIIDSWF DNYLGVVSLV RVRHGRVKKG DKILVKSTGK VHLVDSVGVF
TPKHTQTADL KAGEVGFIIA SIKDIHGAPV GDTLTLSSTP EVEVLAGFKK IQPQVYAGLF
PVSSDDFEDF RDALQKLTLN DSSLQYMPES SDALGFGFRC GFLGMLHMEI IQERLEREYD
LDLITTAPSV IYELELKTGE TIVVDNPSKL PDVSSVTDFR EPIVTATILV PQEHLGNVIT
LCIEKRGVQR DMQFLGSQVQ VRYDMPMNEV VLDFFDRLKS TSRGYASLDY HFDRYQSANL
VKLDVLINGD KVDALALIVH RDNAAYKGRA LTEKMKELIP RQMFDVAIQA AIGGQIIART
TVKALRKNVL AKCYGGDVSR KKKLLEKQKA GKKRMKQVGN VEIPQEAFLA VLRLDS
|
|---|
| |