Gene PputGB1_4273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4273 
Symbol 
ID5872080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4784120 
End bp4786384 
Gene Length2265 bp 
Protein Length754 aa 
Translation table11 
GC content63% 
IMG OID641549407 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001670497 
Protein GI167035266 
COG category[T] Signal transduction mechanisms 
COG ID[COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATGGC TGGGGCTGCA ACTGTTCGCT GATCTTCCGG CAACCGGGCG CATCGTCATC 
GATTGCCGGC ATGAACCGTT ACTGGTTCTA CTCGCCTACT TCGTCGCCAG CGCGTCCTGC
TTCGCTACCC TCGACATGGC CGAACGCCAG TCACACAGCG ACGACCCCAC CGCACACCGG
CAATGGAACA TGCTCGGCGC CTGCTGCCTG GCCGGCGGCA TCTGGGCCAT GCACTTCATC
AGCATGCTGG CCTTCCAGGC CCCGGTGGAA GTGCACTATG ACGTCTCGCT GACCATCCTC
TCGCTGCTCA TTGCCCTGGG TGTCGCCTGG CTGGCCATGC ACAGCCTCGA ACGCAGCCAG
ATGCGCGCGT ATCACTTTGT GCTTAGCGCT GCGCTGATTG GCCTGGGCAT CATCCTGATG
CATTTTGTCG GCATGGCCGC AATGGAAACC GGCGCCGTCC AGTACTACCA GACCGGCCTG
CTGCTGGCCT CTGCCGCCAT CGCCCTGCTC ACGAGCCTGG CCGCGTTGTG CCTGGCTCGC
TATTTGCGCA ATGGCAGCGG CACCCTGTAC CAGGCCATGA AGTACGGCGC CAGCCTGCTG
CTGGCAGGCG GTATCGTTAC CACCCATTTC ACCGCGATGT CAGCCATGAC CCTGGTCATC
CCGGCCGATA CCGCACTGCG TCTGCCGTCT GGCGACAACA GCCTGCAACT GGCGCTGGGC
ATTGGCTTCA TCACCCTGCT GATCAGTGGC GCCAGCATCA GCGCCGCGCT GGCCGACAAG
AAGCTGCAGA GCAAAGAGCA CGATCTGCGT CGGGTCAGCG TGCTGCTCAG CCAACTGGAC
CAAGCCCGCG CGTCACTGCA GCAGGCCGCG CATTACGATG CCCTGACCAA CCTGGTCAAT
CGCCGTGGTT TCAACCAGGT GTTCGCCGAA CGCCTGGTCG AACACCAGGC CAACGAAAAC
CGCCTGGCGG TGATGTTCCT CGACATCGAC CATTTCAAGC GCATCAACGA CAGCCTCGGC
CACGACGCCG GTGACGAGCT GCTCAAGGTG ATCGCCAACC ACATCAAGGC CGCTACCCGC
AGCCAAGACC TGGTTGCGCG CTTGGGTGGC GACGAGTTCT GTGTGGTCAC CAGCCTCAAC
AGCCGCGACG AAGCCCGTCA CCTGGCCCAG CGCATCATGC AACGAATGAA AGACCCCATC
GACCTGGGCG GCCGGCGCAT GGTCATGACC ACCAGCATTG GCGTGAGCAT CTTCCCGGAC
GACGGCAGCA CAGCCGAAGA GTTGCTCAAG CACGCCGACC TGGCCCTCTA TCAATCCAAG
GACAACGGCC GCAACAGCCT GAACTTCTTC AACGACAGCC TGAAGGCCAG GGCTTCGATT
GCACTGCAAC TGGAAGAAGA GCTGAGACTG GCCCTGTTGG AAGAGCGCGG GTTGTGCGTG
CACTACCAGC CCATCTTCGA CCTGCGCAGC GGGCAAGTGG CCAAACTGGA AGCGCTGCTG
CGCTGGCAGC ACCCGCAACA CGGCCTGCTG GGGCCCGACC GTTTCATCGG CATTGCCGAA
GCCAACGGCC TGATCATCGA CCTCGACTTG TGGGTATTGC GCCACGCCTG CGCCGACCTG
GCCTACTTGC AGCGCCACGG CTACGGCGAA CTCAAGGTCA CGGTCAACTG CTCGGCAGTC
ACCCTCAGCC ACGACGAACT GCCCAACGAA GTTGAAAAGG CGCTGTTCCA TGCCGCCCTG
GCGCCGCGCC AACTTGAGCT GGAGGTGACC GAGAACGCAC TGATGGGCGA TATCCAGCGT
ACGGTCAGCC TGCTCAAGCG CGTGCGCGCC CTGGGCGTGG CGCTGTCGAT CGATGACTTT
GGCACTGGCT ACTCGTCACT GGCCTACCTC AAGCGCCTGC CACTGGACGT GCTGAAAATC
GACCGCACCT TCCTGCAGGA TGTGCCGGGC AGCCAGAAAG ACCGCGAAAT CGTCCAGGCG
ATCATCATCA TGGCGCATAC CCTGCACTTG CAGGTCGTCA GCGAGGGCGT GGAAACCGCC
GAACAACAGG CCTTCCTGGA AAGCCACGGT TGCGACTACC TGCAGGGCTA CCTGCTGGGG
CGCCCCGTGC CGCTGGCAGA GCTGCGGCCG CTGCTGGAGC GGCTACAGCG CCAGAACGGC
GTACTCACGC CTTGTTGCGG TACAGCTCCA CCAGGGTCGC CGGGTCTTTT TGCAGGTAAC
CCTGGCTACC GTGCAGGCGC ATCAATTGCG CGGCGAGGCC GCTGA
 
Protein sequence
MEWLGLQLFA DLPATGRIVI DCRHEPLLVL LAYFVASASC FATLDMAERQ SHSDDPTAHR 
QWNMLGACCL AGGIWAMHFI SMLAFQAPVE VHYDVSLTIL SLLIALGVAW LAMHSLERSQ
MRAYHFVLSA ALIGLGIILM HFVGMAAMET GAVQYYQTGL LLASAAIALL TSLAALCLAR
YLRNGSGTLY QAMKYGASLL LAGGIVTTHF TAMSAMTLVI PADTALRLPS GDNSLQLALG
IGFITLLISG ASISAALADK KLQSKEHDLR RVSVLLSQLD QARASLQQAA HYDALTNLVN
RRGFNQVFAE RLVEHQANEN RLAVMFLDID HFKRINDSLG HDAGDELLKV IANHIKAATR
SQDLVARLGG DEFCVVTSLN SRDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGVSIFPD
DGSTAEELLK HADLALYQSK DNGRNSLNFF NDSLKARASI ALQLEEELRL ALLEERGLCV
HYQPIFDLRS GQVAKLEALL RWQHPQHGLL GPDRFIGIAE ANGLIIDLDL WVLRHACADL
AYLQRHGYGE LKVTVNCSAV TLSHDELPNE VEKALFHAAL APRQLELEVT ENALMGDIQR
TVSLLKRVRA LGVALSIDDF GTGYSSLAYL KRLPLDVLKI DRTFLQDVPG SQKDREIVQA
IIIMAHTLHL QVVSEGVETA EQQAFLESHG CDYLQGYLLG RPVPLAELRP LLERLQRQNG
VLTPCCGTAP PGSPGLFAGN PGYRAGASIA RRGR