| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4272 |
|---|
| Symbol | |
|---|
| ID | 5872079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4780990 |
|---|
| End bp | 4783836 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549406 |
|---|
| Product | ATP-dependent helicase HepA |
|---|
| Protein accession | YP_001670496 |
|---|
| Protein GI | 167035265 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGC AGTATCAACC GGGGCAACGC TGGATCAGCG ACAGCGAAGC AGAGCTCGGC
CTGGGTACCA TCCTGGCGCA GGATGGCCGC CTGTTGACCG TGCTCTACCC GGCCACTGGC
GACACCCGCC AGTATTCCCT GCGCAATGCG CCGCTGACCC GCGTGCGCTT CTCGCCAGGT
GACCAGATCA CCCACTTCGA AGGCTGGAAG CTGACCGTCC GCGAGGTCGA GGACATCGAC
GGGTTGATGG TCTACCACGG CCTGGACGGG CAAAACCAGC CGCGTACCCT GCCAGAAACT
CAGCTGTCGA ACTTCATCCA GTTCCGCCTG GCCAGCGACC GCCTGTTCGC CGGGCAGATC
GACCCGCTGT CGTGGTTCAG CCTGCGCTAC AACACCCTGC AGCACACCAG CAAACAGATG
CAGTCGGCGC TGTGGGGCCT GGGCGGCTGC CGCGCACAAC CCATCGCCCA CCAGTTGCAC
ATCGCCCGTG AAGTCGCCGA CCGCAGCGCT CCGCGCGTTT TGCTGGCCGA CGAAGTGGGC
CTGGGCAAAA CCATCGAGGC CGGCCTGGTC ATTCACCGCC AGCTGCTGTC TGGCCGTGCC
AACCGCGTAC TGATCCTGGT GCCAGAAAAC CTCCAGCACC AGTGGCTGGT GGAAATGCGC
CGGCGCTTCA ACCTTCAGGT AGCCCTGTTC GACGCCGAAC GCTTCATCGA AAGCGACGCC
AGCAACCCGT TCGAAGACGC CCAGCTGGCG CTGGTTGCGT TGGAGTGGCT GGTCGACGAC
GAAAAAGCCC AGGACGCGCT GTTTGCCGCT GGCTGGGACC TGATGGTCGT CGACGAAGCT
CACCACCTGG TCTGGCACGA AGACCAGGCC AGCACCGAAT ACAGCCTGGT CGAGCAACTG
GCCCAGGTGA TCCCGGGCGT GCTGCTGCTC ACCGCCACCC CCGAGCAGCT TGGCCAGGAC
AGCCACTTCG CCCGCCTGCG CCTGCTCGAC CCTAACCGTT TCCACGACCT GGCGGCCTTC
CGCGCCGAGA GCGAGCACTA TCGCCCGGTC GCCGAGGCGG TACAGGAACT GCTCGACGAA
GGCCGCCTGT CGCCCAAGGC CCACGCCACC ATCCAGGGCT TCCTGGGTGC CGAAGGCGAA
GCCCTGCTGG CCGCGGTCAA CGATGGCGAC ACCCAGGCCA GCGCGCGTCT GATCCGCGAG
CTGCTGGATC GCCACGGCAC CGGCCGCGTG CTGTTCCGTA ACACCCGTGC GGCGATTCAG
GGCTTCCCCG AGCGCCAGTT GCACCCCTAC CCGCTGGCCA CACCCGAGCA GTACCGCGAC
CTGCCAGCCG GCGAGCACGC CGAGCTGTAC CCGGAAGTCG CCTTCCAAGC CCAAGGGGAA
GCGGCCGACG ACGAGCGCTG GTGGCGTTTC GACCCGCGCG TGGATTGGCT GATCGACACC
CTGAAGATGC TCAAGCGCAC CAAGGTGCTG GTGATCTGCG CCCACGCCGA AACCGCCATG
GACCTGGAAG ACGCCCTGCG CGTGCGCTCC GGTATCCCGG CCTCGGTGTT CCACGAAGGC
ATGAGCATCC TCGAGCGCGA CCGCGCCGCT GCCTACTTCG CCGATGAAGA GTTTGGCGCC
CAGGTGCTGA TCTGCTCCGA AATCGGCAGC GAAGGCCGCA ACTTCCAGTT CGCTCACCAC
CTGGTGATGT TCGACCTGCC GGCGCACCCC GACCTGCTCG AACAGCGCAT TGGCCGCCTT
GACCGGATCG GCCAGAAGCA CACCATCCAG TTGCACATCC CGTATCTGCA GGACAGCCCG
CAAGAGCGTC TGTTCCAGTG GTACCACGAA GGTCTCAACG CCTTCCTCAA CACCTGCCCC
ACCGGCAACG CCCTGCAGCA CCAGTTCGGC CCACGCCTGC TGCCGCTGCT CGAGGGTGGC
GAAAGCAAGG CCTGGGATGC CCTGGTGGCC GATGCCCGCG GCGAGCGCGA GCGCCTGGAA
GCCGAACTGC ACACAGGGCG TGACCGTCTG CTGGAGCTCA ACTCCGGCGG TGCCGGCGAA
GGCCAGGCGC TTGTCGAGGA CATTCTCGAA CAGGACGACC AATTCGCCCT GCCGATCTAC
ATGGAAACCC TGTTCGACGC CTTCGGCATC GACAGTGAAG ACCATTCCGA GAACGCACTG
ATCCTCAAAC CAAGCGAGAA GATGCTCGAT GCCAGCTTCC CGCTGGGCGA CGACGAAGGT
GTGACCATTA CCTACGACCG CGCCCAGGCG CTGTCGCGCG AGGATATGCA GTTCCTTACC
TGGGAACACC CTATGGTGCA GGGCGGCATG GACCTGGTGC TGTCCGGCTC GATGGGCAAC
ACCGCCGTGG CGCTGATCAA GAACAAGGCG CTCAAACCGG GCACCGTGCT GCTGGAATTG
CTGTTCGTCA GTGAAGTGGT GGCACCGCGC AGCCTGCAAC TGGGCCGCTA CCTGCCGCCG
GCGGCATTGC GCTGCCTGCT CGACGCCAAC GGCAACGACC TGGCATCGCG CGTGGCCTTC
GAAACCCTCA ACGACCAGCT CGAAAGCGTG CCACGCGCCA GCGCCAACAA GTTCGTCCAG
GCCCAACGCG ATGTACTGGC CAAGCGCATC AGTGGCGGCG AGGAGAAGAT CCTGCCCATC
CACGTCGAGC GCGTTGCCGA AGCCCAGCGC CGTCTGGCGG CGGAGGCAGA CGAAGAGTTG
GCCCGCCTCG TAGCCCTGCA AGCGGTCAAC CCAAGTGTGC GTGACAGCGA AATCGACGCC
CTGCGCAAGC AACGCGAAGA TGGCCTGGCA ATGCTGGAGA AAGCCGCCCT GCGCCTGGAA
GCCATTCGCG TGCTGGTGGC TGGCTGA
|
|---|
| Protein sequence | MAQQYQPGQR WISDSEAELG LGTILAQDGR LLTVLYPATG DTRQYSLRNA PLTRVRFSPG
DQITHFEGWK LTVREVEDID GLMVYHGLDG QNQPRTLPET QLSNFIQFRL ASDRLFAGQI
DPLSWFSLRY NTLQHTSKQM QSALWGLGGC RAQPIAHQLH IAREVADRSA PRVLLADEVG
LGKTIEAGLV IHRQLLSGRA NRVLILVPEN LQHQWLVEMR RRFNLQVALF DAERFIESDA
SNPFEDAQLA LVALEWLVDD EKAQDALFAA GWDLMVVDEA HHLVWHEDQA STEYSLVEQL
AQVIPGVLLL TATPEQLGQD SHFARLRLLD PNRFHDLAAF RAESEHYRPV AEAVQELLDE
GRLSPKAHAT IQGFLGAEGE ALLAAVNDGD TQASARLIRE LLDRHGTGRV LFRNTRAAIQ
GFPERQLHPY PLATPEQYRD LPAGEHAELY PEVAFQAQGE AADDERWWRF DPRVDWLIDT
LKMLKRTKVL VICAHAETAM DLEDALRVRS GIPASVFHEG MSILERDRAA AYFADEEFGA
QVLICSEIGS EGRNFQFAHH LVMFDLPAHP DLLEQRIGRL DRIGQKHTIQ LHIPYLQDSP
QERLFQWYHE GLNAFLNTCP TGNALQHQFG PRLLPLLEGG ESKAWDALVA DARGERERLE
AELHTGRDRL LELNSGGAGE GQALVEDILE QDDQFALPIY METLFDAFGI DSEDHSENAL
ILKPSEKMLD ASFPLGDDEG VTITYDRAQA LSREDMQFLT WEHPMVQGGM DLVLSGSMGN
TAVALIKNKA LKPGTVLLEL LFVSEVVAPR SLQLGRYLPP AALRCLLDAN GNDLASRVAF
ETLNDQLESV PRASANKFVQ AQRDVLAKRI SGGEEKILPI HVERVAEAQR RLAAEADEEL
ARLVALQAVN PSVRDSEIDA LRKQREDGLA MLEKAALRLE AIRVLVAG
|
|---|
| |