| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4260 |
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| Symbol | |
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| ID | 5872067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4769978 |
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| End bp | 4771060 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641549394 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001670484 |
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| Protein GI | 167035253 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0000860912 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGA TGGACAACCG CAGCGGCAAA GGCCTTTCTT TCGTCAAGCG CATCTACCTG
CCGCGTGTCA TCGGCCTGGG CATCGGCCTG TTCAGTGTCA TGGCGGCCAT TGCGCCGCTG
TCGCCACCCA CCTGGGCATG GCTGCTGGTA CTGTTCAATG GGCTGTTGTG GCCACACATC
GCCTACCTGT GGGCTGCCCG CTCGGCAGCG CCGTACCAGG CAGAACAACG CAATTTGCTG
CTGGATTCGC TAATGGGCGG GTTCTGGACC GCCGCCATGC ACTTCAACCC GCTGCCCAGC
GTGACCGTGC TGTCGATGAT GACCATGAAC AACGTCGCCG CCGGCGGCAA ACGCATGGTC
TTTCGCGGGG TGCTGGCGCA GCTGGCTGGC ATGCTTGTCG CCCTTCTGCT GCTCGGCCCC
GGCTTGCAAC TGACCGCCAC CCCCCTGCAG GTCTATGCCT GCCTGCCAAT GCTCACGCTT
TACCCGCTGG CCTTGGGCTG GGTGTGCTAC CAGCTGGCGA TCAAGCTGGG CGACCACAAG
CGCCGGCTGA GCGCACTGAG CCTCACCGAC AGCCTGACCG GGCTGCTCAA CCACGGCGCC
TGGAAAGACC TGCTGCTGCT CAAGTTCCAG GCCTGCAAGC AGCAACAGGG GCACGCGGTG
ATTGCCCTGA TCGACATCGA CCACTTCAAG ACCATCAACG ACACCTTCGG CCATGTGGTC
GGCGACTGTG TCTTGCGCCA GCTCAGCGTC GAGCTGCGGC GCAACCTGCG CGAAGGCGAC
CAAGCCGGGC GTTACGGCGG CGACGAGTTC TGCGTGATCC TGCCCGATAC CAGCGAAGCC
CAGGCCTGTC ATGCCATGGA GCGCCTGCGC GAGCAGGTTT CCAGCTACCG CAACCCACAG
CTACCCCACT TGCGCATCAG CCTGAGTATC GGCCTGTCAC CATTCGAGGC CGGCCTGGAG
TCCCCCGAGC ACTGGCTCGA ACAGGCGGAC AAGGCGCTGT ACACCGCCAA GCACGCTGGC
CGCGACCAAG TCAATTTTGC CCGCGCTGAC GCTGCCGCGC TCAAGCTGGC CTATCCTGAT
TGA
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| Protein sequence | MTMMDNRSGK GLSFVKRIYL PRVIGLGIGL FSVMAAIAPL SPPTWAWLLV LFNGLLWPHI
AYLWAARSAA PYQAEQRNLL LDSLMGGFWT AAMHFNPLPS VTVLSMMTMN NVAAGGKRMV
FRGVLAQLAG MLVALLLLGP GLQLTATPLQ VYACLPMLTL YPLALGWVCY QLAIKLGDHK
RRLSALSLTD SLTGLLNHGA WKDLLLLKFQ ACKQQQGHAV IALIDIDHFK TINDTFGHVV
GDCVLRQLSV ELRRNLREGD QAGRYGGDEF CVILPDTSEA QACHAMERLR EQVSSYRNPQ
LPHLRISLSI GLSPFEAGLE SPEHWLEQAD KALYTAKHAG RDQVNFARAD AAALKLAYPD
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