Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4239 |
Symbol | |
ID | 5872043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4742245 |
End bp | 4743483 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641549370 |
Product | outer membrane porin |
Protein accession | YP_001670463 |
Protein GI | 167035232 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGTCT GCCATACCCT GCCTTTCGCC CTGTTGGGCG CCGGTGTCAT CGCTGGCCTG CCGGGCACCA GCCTGGCTGC TGGATTTGTC GAAGACAGCA AGGCTACGCT CGGGCTGCGT AACTTCTACA TCAACCGTAA CTTCACCAAC CCCAGCAACC CGCAAAGCAA GGCCGAGGAA TGGACGCAAA GCTTCATCCT CGATGCGCGG TCGGGATTCA CCCAAGGGCC GATCGGGTTC GGGGTGGATG TGCTGGGGCT ATGGTCGGTA AAGCTCGATG GCGGCGGCGG CACTTATGGT ACAGCGTTGC TCCCGCGCCA CGACGATGGC AAGCCAGCAG ACGACTACGG GCGCCTGGCA GTCGCAGGCA AGGCACGGAT CTCCAAGACC GAACTGAAAA TCGGCGAGTG GATGCCGGTG CTACCGATTT TGCGTTCGGA CGACGGGCGC TCGCTGCCGC AGACGTTCCG TGGCGGGCAA GTCACCTCCA ACGAGATCGC CGGGTTGACG TTGTATGGCG GCCAGTTCCG CGGCAACAGC CCGCGTAACG ACGCCAGCAT GGAAGACATG AGCTACGGCG GCGGGGTGTC AGACCGCTTC AACTTCGTCG GTGGCGAGTA TAAATTCAAC CAGGACCGCA CGCTGGTGGG GTTGTGGAAT GCGGTACTGA AGGACGTGTA TCAGCAGCAG TATCTGCAAG TGAGCCATAA CCAGCCAGTG GGTGACTGGA CCCTGGGCGC CAACCTGGGC TACTTCCAGG GCGATGAGGA TGGCTCCGAG CGCGCCGGGC AGTTGGACAA CAAGACCTAC TCGGGGATGT TCTCGGCCAA GTACGGCGGC AGCACGTTCT GGGTGGGGCT GCAGAAAGTT GATGGCGATA CCTGGATGCG GGTCAACGGC ACCAGCGGCG GGACCCTGGC CAACGACAGT TACAACTCCA GCTTCGACAA TGCCAACGAA CGCTCGTGGC AGGTGCGCCA TGACTTCAAC TTCGTGACGG TCGGGGTGCC GGGGTTGACC TTGATGAACC GCTATATCAG CGGGCGCGAT GTGCATACCG GGTCGGTCAC TGATGGCAAG GAGTGGGTGC GCGAGACGGA GCTTGCGTAT GTGATCCAGA GCGGGGCGTT CAAGGACTTG AGTGTGAAGT GGCGCAACTC GTCGATTCGG CGGGATTACA GCAACAACGA GTTTGATGAG AACCGGTTGA TCTTCAACTA CCCGTTGTCG TTGCTGTAA
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Protein sequence | MRVCHTLPFA LLGAGVIAGL PGTSLAAGFV EDSKATLGLR NFYINRNFTN PSNPQSKAEE WTQSFILDAR SGFTQGPIGF GVDVLGLWSV KLDGGGGTYG TALLPRHDDG KPADDYGRLA VAGKARISKT ELKIGEWMPV LPILRSDDGR SLPQTFRGGQ VTSNEIAGLT LYGGQFRGNS PRNDASMEDM SYGGGVSDRF NFVGGEYKFN QDRTLVGLWN AVLKDVYQQQ YLQVSHNQPV GDWTLGANLG YFQGDEDGSE RAGQLDNKTY SGMFSAKYGG STFWVGLQKV DGDTWMRVNG TSGGTLANDS YNSSFDNANE RSWQVRHDFN FVTVGVPGLT LMNRYISGRD VHTGSVTDGK EWVRETELAY VIQSGAFKDL SVKWRNSSIR RDYSNNEFDE NRLIFNYPLS LL
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