| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4219 |
|---|
| Symbol | rimO |
|---|
| ID | 5872023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4719383 |
|---|
| End bp | 4720714 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549350 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_001670443 |
|---|
| Protein GI | 167035212 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.862711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCA CGCCCGCCAC CCCCAAGGTA GGTTTCGTAA GCCTGGGTTG CCCAAAAGCC
CTGGTCGATT CCGAGCGCAT CCTGACCCAG CTGCGCATGG AAGGCTATGA AGTCGTGCCC
ACCTACGAGG ACGCCGACGT TGTGGTGGTC AACACCTGCG GCTTCATCGA CAGCGCCAAG
GCCGAGTCGC TGGAAGTGAT CGGCGAAGCG ATCAAGGAAA ACGGCAAGGT CATCGTCACC
GGCTGCATGG GCGTAGAAGA AGGCAGCATC CGCGACGTGC ACCCGAGCGT GCTGTCGGTC
ACCGGCCCGC AGCAGTACGA GCAGGTAGTC AACGCCGTGC ACGAAGTGGT GCCGCCGCGT
CAGGACCACA ACCCACTGAT CGACCTTGTG CCGCCACAGG GTGTCAAGCT GACCCCGCGC
CACTATGCGT ACCTGAAAAT TTCCGAAGGC TGCAACCACA GCTGCAGTTT CTGCATCATC
CCGTCGATGC GCGGCAAGCT GGTCAGCCGC CCGGTGGGCG AAGTGCTGAG CGAGGCCGAG
CGCCTGGTGA AGGCTGGCGT GAAGGAGATC CTGGTGATTT CCCAGGACAC CAGCGCCTAC
GGCGTCGACG TCAAGTACAA GACCGACTTC TGGAATGGCC GCCCGGTCAA GACCCGCATG
CTTGAGCTGT GCGAAGCGCT GAGCAGCCTG GGCGCCTGGG TCCGTCTGCA CTACGTGTAC
CCATACCCGA ACGTGGACGA CGTGATCCCG CTGATGGCCG CCGGCAAGAT CCTGCCGTAC
CTGGACATCC CGTTCCAGCA CGCCAGCCCG AAAGTGCTCA AGTCGATGAA GCGCCCGGCC
TTCGAAGACC GCACCCTGGC GCGCATCAAG AACTGGCGCG AACAGTGCCC TGAGTTGGTG
ATCCGCTCTA CCTTCATCGT CGGCTTCCCG GGCGAGACCG AGGAAGACTT CCAGTACCTG
CTGGACTGGC TGACCGAGGC CCAGCTCGAC CGCGTTGGCT GCTTCCAGTA CTCGCCGGTG
GAAGGCGCCC CGGCCAACGA CCTGGGCCTG GAAGAAGTGC CGGACGACAT CAAACAAGAG
CGCTGGGACC GCTTCATGGC CCACCAACAA GCCATCAGCA CCGCCCGCCT GCAACTGCGC
ATCGGTAAGG AAATCGAGGT GCTGATCGAC GAAGTCGAGG AGCAGGGTTC GGTTGGCCGC
AGCTTCTTCG ATGCCCCGGA AATCGACGGC AACGTGTTCA TCGACGGTGA CCATGGTTTC
AAGCCAGGCG ACAAAGTGCG TTGCCGTGTC GTGGATGCCG ACGAATACGA CATGTGGGCA
GAGCCTATCT AA
|
|---|
| Protein sequence | MSTTPATPKV GFVSLGCPKA LVDSERILTQ LRMEGYEVVP TYEDADVVVV NTCGFIDSAK
AESLEVIGEA IKENGKVIVT GCMGVEEGSI RDVHPSVLSV TGPQQYEQVV NAVHEVVPPR
QDHNPLIDLV PPQGVKLTPR HYAYLKISEG CNHSCSFCII PSMRGKLVSR PVGEVLSEAE
RLVKAGVKEI LVISQDTSAY GVDVKYKTDF WNGRPVKTRM LELCEALSSL GAWVRLHYVY
PYPNVDDVIP LMAAGKILPY LDIPFQHASP KVLKSMKRPA FEDRTLARIK NWREQCPELV
IRSTFIVGFP GETEEDFQYL LDWLTEAQLD RVGCFQYSPV EGAPANDLGL EEVPDDIKQE
RWDRFMAHQQ AISTARLQLR IGKEIEVLID EVEEQGSVGR SFFDAPEIDG NVFIDGDHGF
KPGDKVRCRV VDADEYDMWA EPI
|
|---|
| |