| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4186 |
|---|
| Symbol | |
|---|
| ID | 5871986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4681921 |
|---|
| End bp | 4683357 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549313 |
|---|
| Product | peptidase M48 Ste24p |
|---|
| Protein accession | YP_001670410 |
|---|
| Protein GI | 167035179 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.129955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTAC TGCGCCCTAC CCTGCTGACG CTGGCCTGCC TGATGGCCCT TCCCGGCCAT
GCTGACGACC TGCCATCACT GGGGGATGCC AGTTCCGCGA TCGTTTCGCC GCAACAAGAG
CACCAACTGG GCCGCGCCTG GCTGAGCCTG CTGCGCGGCC AGGTCAACCA GCTCAACGAC
CCACAGCTCA AGGACTACGT CGAAACCAGC GTGTACAAGC TGGCCGAGAC CAGCCAGCTG
CAGGACCGGC GCCTGGAGTT CATCCTCATC GACAGCCGCG AGCTCAACGC CTTCGCCGCG
CCGGGTGGAA TCGTCGGGGT CAACGGTGGA CTGTTCCTCA ACGCTCAGAC CGAAGGGGAA
TACGCCTCGG TTCTGGCCCA CGAACTGGCG CACTTGTCGC AACGCCACTT CGCCCGCGGC
GTCGAAGCCC AGCAACGCAT GCAATTGCCG ATGATGGCTG CACTGCTGGC CGGCATCGTG
CTGGCCGCCG GTGGCGCTGG CGATGCGGGT ATCGGCATGA TCGCCGGCAC CCAGGCAGCG
GCCATCCAGG AACAACGGCG CTTTTCGCGG CAGAACGAAC AGGAAGCCGA CCGCATCGGC
ATCCAGAACC TGGAAAAGGC CGGCTACGAC CCGCGCAACA TGCCGACCAT GTTCGAGCGC
CTGGCACGCC AGTATCGCTA TGACGCCAAG CCGCCGGAGT TCTTGCTGAC TCACCCGGTG
ACTGAATCGC GTATCGCCGA CACCCGCAAC CGCGCCGACC AGGCGCCCAA AGGCGGCATA
GAAGACAGCA TGCGCTACCA GCTGATTCGT GCTCGGGTGG CGCTGACCTA CGAAGGCACC
CCAGGGCTTG CCGCCAAGCG CTTTCGCGCC CAGTTGGACG AAGACCCGAA ACTGGACGCC
GCGCGCTACG GCCTGGCCCT GGCACAGATC AAGGGCGGCC AGCTGAACGA GGCGCGCGAG
TTGCTCAAGC CGCTGCTGGC CAAGGCGCCG AACGACATCA CCTACAACCT GGCACAGATC
GACCTGGACA TTACCAATAA TCGCCTGGCC GATGCACAAC AGCGGGCCGA GCGAATGCAG
GGGCTGTACC CGGGCAACTA CCCGCTGAAG CAAGTGCGTG CCGACCTGCT GGTAAAGCAG
AACAAGCCTG CCGAGGCGGA GAAGGTGTTG AACGAGCTGG TCAAGAGCCG ACCGGACGAC
CCGGATGTGT GGTACGACAT GGCCGAAGTA CGCGGTTTGT CGGGCAATAC CATTGGTTTG
CACCGGGCGC GGGCCGAGTA CTTCACCTTG GTTGGGGACT TTGACCAGGC GATTCAGCAG
CTGGACTACG CCAAGCGCCG GGCGGGCGGC AACTTCCCAC TGGCCTCGCA GATCGATCAG
CGCCAGCGCG AGATCATGGA GCAGCAGCGC ATGGTTCGGG AAATGATGGG GCGCTGA
|
|---|
| Protein sequence | MNLLRPTLLT LACLMALPGH ADDLPSLGDA SSAIVSPQQE HQLGRAWLSL LRGQVNQLND
PQLKDYVETS VYKLAETSQL QDRRLEFILI DSRELNAFAA PGGIVGVNGG LFLNAQTEGE
YASVLAHELA HLSQRHFARG VEAQQRMQLP MMAALLAGIV LAAGGAGDAG IGMIAGTQAA
AIQEQRRFSR QNEQEADRIG IQNLEKAGYD PRNMPTMFER LARQYRYDAK PPEFLLTHPV
TESRIADTRN RADQAPKGGI EDSMRYQLIR ARVALTYEGT PGLAAKRFRA QLDEDPKLDA
ARYGLALAQI KGGQLNEARE LLKPLLAKAP NDITYNLAQI DLDITNNRLA DAQQRAERMQ
GLYPGNYPLK QVRADLLVKQ NKPAEAEKVL NELVKSRPDD PDVWYDMAEV RGLSGNTIGL
HRARAEYFTL VGDFDQAIQQ LDYAKRRAGG NFPLASQIDQ RQREIMEQQR MVREMMGR
|
|---|
| |