| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4121 |
|---|
| Symbol | |
|---|
| ID | 5871921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4602027 |
|---|
| End bp | 4603160 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549249 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_001670347 |
|---|
| Protein GI | 167035116 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.636005 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCATCG AAATTCACTG GATCCGTGAC GACCAGAGCC TGGCCGAACA CTGCCGCGAC
TGGCACCAAC TGCCCTTCGT CGCCGTCGAT ACCGAATTCA TGCGGGTCGA CACCTTCTAC
CCTAAAGCCG GGCTGATCCA GATCGGCGAC GGCCAGCGGG CCTTTTTGAT CGATCCATTG
CTGATCGGTG ACTGGCAACC TTTGGCCGAC TTGCTGGAAG ACAGCGGTGT GGTCAAGGTG
CTGCACGCCT GCAGCGAAGA CCTCGAAGTG CTGTTGCGCC TGACCGGCAA GCTGCCCCAA
CCACTGTTCG ACACGCAGTT GGCCGCCGGT TACCTGAACC TGGGCTTCTC CATGGGTTAT
TCGCGCCTGG TGCAGGACGT GCTGGGCATC GAACTGCCCA AGGGTGAAAC CCGCTCCGAC
TGGCTGCAAC GCCCGCTCTC GGAAACCCAG GTCAGCTACG CTGCCGAAGA TGCCGTGCAC
CTTGCCGAAT TGTTCACCGA GCTGCGCCCG CGTTTGAGCG ACGACAAGTA CACCTGGGTG
CTGGAAGACG GCGCCGAGCT GGTGGCCGCG TTGCGCCGTG AAGTCGAGCC CGAAACCCTG
TACCGCGACG TGAAACTGGC CTGGAAGCTG GCGCCTCAGC AACTGGCCGT GCTGCGTGAG
CTGTGCGCCT GGCGCGAGCG CGAAGCACGC CACCGCGACG TGCCGCGTAA CCGCATCCTC
AAAGAGCACT CGCTGTGGCC CATGGCCAAG AGCCAGCCAA ACAACCTGTC GGCGTTGGCC
AAGATCGACG AGATGCACCC GCGCACCATT CGTCAGGACG GAGAGTTTCT CATCCAGCTG
ATCAAGCGCG CCGCCAGCCT GCCCGCCGAA CAATGGCCGC AGGTGTTGCC CGAGCCGCTG
CCGATCGAAG CCGCTGGCAT CCTCAAGCAG CTGCGTGCCA TCGGCCAGGC CGAAGGCGAG
CGCCTGGGGA TTGCCCCTGA GCTGATGCTG CGCAAGAAAA CCCTGGAGGC GCTGCTCAAG
AGCGGTTACC CCCATGGTCC TTATCAACTG CCCGATTCGC TGCGCGGCTG GCGCCGTGAG
CGTATGGGCC AGGCCCTGCT GGACAACCTT GCAGGTGCCG GAGAGATTCG ATGA
|
|---|
| Protein sequence | MAIEIHWIRD DQSLAEHCRD WHQLPFVAVD TEFMRVDTFY PKAGLIQIGD GQRAFLIDPL
LIGDWQPLAD LLEDSGVVKV LHACSEDLEV LLRLTGKLPQ PLFDTQLAAG YLNLGFSMGY
SRLVQDVLGI ELPKGETRSD WLQRPLSETQ VSYAAEDAVH LAELFTELRP RLSDDKYTWV
LEDGAELVAA LRREVEPETL YRDVKLAWKL APQQLAVLRE LCAWREREAR HRDVPRNRIL
KEHSLWPMAK SQPNNLSALA KIDEMHPRTI RQDGEFLIQL IKRAASLPAE QWPQVLPEPL
PIEAAGILKQ LRAIGQAEGE RLGIAPELML RKKTLEALLK SGYPHGPYQL PDSLRGWRRE
RMGQALLDNL AGAGEIR
|
|---|
| |