Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4028 |
Symbol | |
ID | 5871828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4480198 |
End bp | 4481091 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641549156 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001670254 |
Protein GI | 167035023 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.119859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0962956 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCGA CCCTGCCCGA CCTGAAACTG CTGCGCATCT TCATCAGCGT GGTGCGCCAC CAGGGCTTTG CCAACGCCCA GCGCGAACTG AACCTGTCCA CCTCGGCCAT CAGCACCTAC ATGAGCCAGC TGGAGGGTGC TTTGGGTATC GTGCTGTGCC ACCGTGGGCG TGGGGGCTTC AGCCTGACCA GCAAGGGCGA GCTGTTCCAT CAGGAAACCC TGCGCCTGCT GGCCGAGCTG GACGGCTTCG AGCAGTATGC CGCCGCCCTC AAAGGCGAGT TGCGCGGCAC CCTCAATCTT GGGGTGATCG ACTCCACGGT CGGCGACCGT GCCTTGCCGC TGGCCGAGGC CATCGGGGCC TATAGCCAGG AACACCCGGC GGTGCACCTG CATCTGTCGG TGTCCAGCCC TTACGAGCTG CAACTGGGTG TGCAGGACAA CCGCCTGGAC CTGGCCATCG GCGCGTTTTC TTCGCGCATG AGCGGGCTGC TTTACCAGCC GCTGTACCGT GAACAGCATT GGTTGTACTG CAGCAGCCGC CATCCGCTGT ACACCGAGCG GCGCATTCCC GAGCAGGTGG TGACCCAGCA GCGCATGGTC GGGCGCGGCT ACTGGAGCCA GGCCGAACTG GCCCGGCATG GCTTCAAGCA CAGCGCGGCA ACAGTGGAAA GTATGGAGGC GCAGTTGATC CTGATCCTTT CCGGCGCCTA CATCGGCTAC TTGCCCGAGC ACTACGCCCA GGCCTGGGTC GACAAGGGCG ACTTGCGCGT GCTGTCGCCG TCGACCTTCG GTTACCAGGC CCCGTTCTCG CTGATCATTC GCCGTGGGCG TAGCCGTGAA CCGTTGATCC AGACCTTCCG TGACCTGCTG AAAAGCCAAC TCAACGTGGG CTGA
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Protein sequence | MASTLPDLKL LRIFISVVRH QGFANAQREL NLSTSAISTY MSQLEGALGI VLCHRGRGGF SLTSKGELFH QETLRLLAEL DGFEQYAAAL KGELRGTLNL GVIDSTVGDR ALPLAEAIGA YSQEHPAVHL HLSVSSPYEL QLGVQDNRLD LAIGAFSSRM SGLLYQPLYR EQHWLYCSSR HPLYTERRIP EQVVTQQRMV GRGYWSQAEL ARHGFKHSAA TVESMEAQLI LILSGAYIGY LPEHYAQAWV DKGDLRVLSP STFGYQAPFS LIIRRGRSRE PLIQTFRDLL KSQLNVG
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