| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4022 |
|---|
| Symbol | |
|---|
| ID | 5871822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4472764 |
|---|
| End bp | 4474911 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641549150 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001670248 |
|---|
| Protein GI | 167035017 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0251984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAC AGGCTCAGCG CGTTCTCAAG GACATCTTCG GCTACGACAG TTTCCGTGGG
CGCCAGGCAG CGATCATCGA ATGCGTGGCC AATGGCGGCG ATGCCCTGGT GCTGATGCCC
ACCGGCGGCG GCAAGTCGTT GTGCTTTCAG GTGCCGGGGC TGCTGCGTCC GGGCCTGACG
GTGGTGGTCT CGCCACTGAT CGCGTTGATG GACGACCAGG TCGCCACGCT TGACGAACTG
GGCGTTTCGG CGGCCGCGCT GAATTCCACC CTGAGCGCGG AACAGCAGCG TGAACTGGCC
GGGCGCCTGC GCCGTGGCGA GGTAAAAATG CTCTACCTGG CGCCGGAGCG CCTGGTGCAG
CCGCGCATGC TGGATTTTCT GCGTGACCTG GACATCTCGC TGTTCGCCAT CGACGAGGCC
CACTGCGTTT CGCAATGGGG CCACGATTTC CGCCCCGAGT ACCTGCAACT GGGCCAACTG
GCCGAACTGT TCCCGCATGT GCCGCGCATT GCGCTTACTG CCACTGCCGA TATGCGCACC
CGCGAAGAAA TCGTCCAGCG CCTACACCTG CAAGGCGCCG AACGCTTCCT CTCGAGCTTC
GACCGACCCA ACATCTTCTA CCGCATCGTG CCCAAGGAAG CGCCGCGCAA GCAGTTGATG
GCTTTTCTCG GCGAGCGCCG CGGCAACGCC GGTATCGTTT ACTGCCTGTC GCGCAAGAAG
GTCGACGAAA CCGCCGCATT CCTCTGCCAG CAGGGCTTCC CGGCGCTGCC GTATCACGCC
GGCCTGGCTG CCGAGACACG CGCGGCCAAC CAGCACCGCT TTCTCAACGA GGAGGGGCTG
ATCATGGTCG CGACCATTGC CTTCGGCATG GGTATCGACA AGCCCAACGT GCGCTTCGTT
GCCCACCTCG ACCTGCCTAA ATCGCTTGAG GCCTATTACC AGGAAACCGG CCGCGCCGGC
CGTGACGGCC TGCCGTCCGA TGCCTGGATG GCCTATGGCC TGCAGGACAT GGTGATGCTC
AAGCAGATGC TGCAGAACTC CGAAGGCGAT GAGCGCCACA AGCGCATCGA ACAGCACAAG
CTCGACGCCA TGCTGGCGCT GTGCGAAGAA ACCCGCTGCC GCCGCCAGTC GCTGCTGGCC
TACTTCGATG AAACCCTCGA ACAACCGTGC GGCCACTGCG ACAACTGTGT CGACAACATC
CAGACTTGGG ACGCTACCGA GCCGGCGCGC CAGGCGCTGT CGGCGGTGTT CCGCACCGGC
CAGCGCTATG GTGTCGGCCA TCTGGTCGAT GTACTGCTGG GCAAGGACAA CGAGAAGGTG
CGCAATTTCG GCCACGAGAA GCTGTCGGTA TTCGGCGTTG GCAAGGGCCT GGCCGAGGTC
GAATGGCGTT CGCTGTTCCG TCAGTTGGTG GCGCGCGGCC TGGTCGACAT CGACCTGGAA
GGTTACGGCG GCCTGCGCCT GTCCGACAGC TGCCGGCCAC TGCTGCGCGG CGAGGTGACC
TTGCAACTGC GCCGTGACCT CAAGCCGCAG ACCACGGCCA AGGCCTCGTC GTCCAGCGGC
GGCAGCCCGG CCAGCCAGCT GGTGCGTGCC GAAGAGCGCG AACTGTGGGA AGCGTTGCGC
ACGTTGCGGC GCAAGTTGGC CGAGGAGCAC AGCGTGCCGC CGTATGTCAT CTTCCCCGAT
TCGACGCTGC TGGAAATGCT GCGCAGCCAG CCGGTCAGCC TCAGCGACAT GGCCCAGGTA
AGCGGTGTGG GCGCGCGCAA GCTGGAGCGC TATGGCCAGG CGTTCCTCGA AGTACTGAAC
AACAGTGGCG GCACCGAAGA GGCACCGAAA GTGGTGCTCG ACCTGCGCCA CGAACTGGTC
AGCCTGGCCC GAGCCGGCAT GACCCCGGCG CAGATCGCCG GGCAGCTCAA CTGCAGCGAG
AAGAACGTCT ATAGCCTGCT GGCCGAGGCA CTGGGCCGCC AGGAGCTGAG CCTGGAGCAA
GCCATCGACC TGCCGGAAGA CCTGATGATG GAAGTGCAGG ACGCGTTCCT GGATGGCGAG
GGCGAGTTGC CGCCGGTGTC GGCCATTGCG CCGCAGTTCG GGGCCCGGGT GCCGGAGGGC
GTGCTGTATT GCGTGCGCGC GGCGCTGGCG GCGGAATTCG AACTGTAA
|
|---|
| Protein sequence | MLEQAQRVLK DIFGYDSFRG RQAAIIECVA NGGDALVLMP TGGGKSLCFQ VPGLLRPGLT
VVVSPLIALM DDQVATLDEL GVSAAALNST LSAEQQRELA GRLRRGEVKM LYLAPERLVQ
PRMLDFLRDL DISLFAIDEA HCVSQWGHDF RPEYLQLGQL AELFPHVPRI ALTATADMRT
REEIVQRLHL QGAERFLSSF DRPNIFYRIV PKEAPRKQLM AFLGERRGNA GIVYCLSRKK
VDETAAFLCQ QGFPALPYHA GLAAETRAAN QHRFLNEEGL IMVATIAFGM GIDKPNVRFV
AHLDLPKSLE AYYQETGRAG RDGLPSDAWM AYGLQDMVML KQMLQNSEGD ERHKRIEQHK
LDAMLALCEE TRCRRQSLLA YFDETLEQPC GHCDNCVDNI QTWDATEPAR QALSAVFRTG
QRYGVGHLVD VLLGKDNEKV RNFGHEKLSV FGVGKGLAEV EWRSLFRQLV ARGLVDIDLE
GYGGLRLSDS CRPLLRGEVT LQLRRDLKPQ TTAKASSSSG GSPASQLVRA EERELWEALR
TLRRKLAEEH SVPPYVIFPD STLLEMLRSQ PVSLSDMAQV SGVGARKLER YGQAFLEVLN
NSGGTEEAPK VVLDLRHELV SLARAGMTPA QIAGQLNCSE KNVYSLLAEA LGRQELSLEQ
AIDLPEDLMM EVQDAFLDGE GELPPVSAIA PQFGARVPEG VLYCVRAALA AEFEL
|
|---|
| |