Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4005 |
Symbol | |
ID | 5871805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4457969 |
End bp | 4458634 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641549133 |
Product | Sua5/YciO/YrdC/YwlC family protein |
Protein accession | YP_001670231 |
Protein GI | 167035000 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0009] Putative translation factor (SUA5) |
TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000000384019 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAACAGCC TTTGGCGCTA TGAACAGGAC GACTACGTGA GCCAATTTTT CCAGATTCAT CCGGAGAACC CACAGGCGCG CTTGATAAAA CAGGCCGTCG AGATCATCCG CAAGGGGGGG GTGGTGGTGT ATCCGACGGA TTCGGCCTAT GCCCTGGGTT GCCAGATGGG CGACAAGAAC GCCATCGAGC GGGTGCGGCG CCTGCGCGGG CTGGACAAGA CGCACAACTT CACCCTGATG TGCTGCGACA TGTCGCAACT GGGCTTGTAC GCCAAGGTCG ATACCGGCAC TTTTCGCCTG CTCAAGGCGC ATGTACCGGG GCCTTACACG TTCATTCTCA ACGGCACGCG TGAAGTGCCG CGCCTGCTGT TGCACGACAA GCGCCGCACC ATCGGGCTGC GTGTACCGAA CCACGTCATT ACCCTGGCCT TGCTGGCCGA GTTGGGCGAG CCACTGATGA GCGTGAGCCT GATCCTGCCG GGCGACAGCG AGCCGATGAC CGACCCTTAC GAGATCCGTG AGCGGCTGGA GCACCATGTC GACCTGGTGA TCGACGGCGG CTTCGGCGAC CTCAAGGCGT CGACCATCAT CGACCTGTCC GGTGACGAGC CGGAACTGAT CCGCGAAGGT TGCGGCGACC CCACGCCGTT CCTGGTCAAC GCGTGA
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Protein sequence | MNSLWRYEQD DYVSQFFQIH PENPQARLIK QAVEIIRKGG VVVYPTDSAY ALGCQMGDKN AIERVRRLRG LDKTHNFTLM CCDMSQLGLY AKVDTGTFRL LKAHVPGPYT FILNGTREVP RLLLHDKRRT IGLRVPNHVI TLALLAELGE PLMSVSLILP GDSEPMTDPY EIRERLEHHV DLVIDGGFGD LKASTIIDLS GDEPELIREG CGDPTPFLVN A
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