| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3978 |
|---|
| Symbol | |
|---|
| ID | 5871778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4423576 |
|---|
| End bp | 4424811 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641549106 |
|---|
| Product | aspartate kinase |
|---|
| Protein accession | YP_001670204 |
|---|
| Protein GI | 167034973 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0527] Aspartokinases |
|---|
| TIGRFAM ID | [TIGR00656] aspartate kinase, monofunctional class
[TIGR00657] aspartate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGA TCGTACAGAA ATTTGGCGGC ACCTCTGTCG GTTCCATCGA GCGGATCGAG
CAGGTAGCCG AAAAGGTCAA GAAACACCGT GAGGCAGGCG ACGACCTGGT GATTGTGCTG
TCGGCCATGA GCGGTGAAAC CAATCGCCTG ATCGACCTGG CCAAGCAGAT TACCGATCAG
CCGGTTCCTC GTGAGCTGGA TGTGATCGTG TCGACCGGTG AGCAGGTCAC CATTGCCCTG
CTGACCATGG CCTTGATCAA GCGTGGTGTG CCAGCGGTGT CCTACACCGG CAACCAGGTG
CGCATTCTCA CCGATAGCTC GCACAACAAG GCGCGCATCC TGCAGATCGA CGACCAGAAA
ATTCGTGCCG ACCTCAAGGA AGGCCGCGTG GTCGTGGTTG CAGGTTTCCA GGGCGTCGAC
GAGCACGGCA GCATCACCAC CCTGGGCCGT GGCGGCTCCG ACACCACCGG CGTGGCCCTG
GCGGCGGCGC TGAAGGCTGA TGAGTGCCAG ATCTACACCG ATGTCGATGG CGTCTACACC
ACCGACCCGC GCGTCGTGCC GCAGGCTCAG CGCCTGGAGA AGATCACCTT CGAAGAGATG
CTGGAAATGG CCAGCCTCGG TTCCAAGGTG CTGCAGATCC GCTCGGTGGA GTTCGCCGGC
AAATACAACG TTCCGCTGCG CGTGCTGCAC AGCTTCAAGG AGGGTCCGGG TACCCTCATT
ACCATTGATG AAGAGGAATC CATGGAACAG CCGATCATTT CCGGTATCGC CTTCAACCGT
GATGAAGCCA AGCTGACCAT TCGCGGCGTG CCGGACACCC CGGGCGTGGC CTTCAAGATC
CTCGGCCCGA TCAGTGCTTC GAACATCGAA GTCGACATGA TCGTGCAGAA CGTTGCCCAC
GATAACACCA CCGACTTCAC CTTCACCGTA CACCGCAACG AGTACGAGAA GGCGCAAAGC
GTGCTGGAAA ACACTGCCCG CGAAATCGGT GCCCGTGAAG TGATCGGCGA CACCAAGATC
GCCAAGGTCT CGATCGTTGG CGTCGGCATG CGTTCGCACG CCGGTGTCGC CAGCCGCATG
TTCGAAGCGC TGGCCAAGGA AAGTATCAAC ATCCAGATGA TCTCCACCTC CGAAATCAAG
GTTTCGGTAG TGATCGAAGA GAAGTACCTG GAGCTGGCCG TACGCGCGCT GCACACCGCG
TTCGAGCTGG ACGCCCCTGC CCGACAGGGC GAGTAA
|
|---|
| Protein sequence | MALIVQKFGG TSVGSIERIE QVAEKVKKHR EAGDDLVIVL SAMSGETNRL IDLAKQITDQ
PVPRELDVIV STGEQVTIAL LTMALIKRGV PAVSYTGNQV RILTDSSHNK ARILQIDDQK
IRADLKEGRV VVVAGFQGVD EHGSITTLGR GGSDTTGVAL AAALKADECQ IYTDVDGVYT
TDPRVVPQAQ RLEKITFEEM LEMASLGSKV LQIRSVEFAG KYNVPLRVLH SFKEGPGTLI
TIDEEESMEQ PIISGIAFNR DEAKLTIRGV PDTPGVAFKI LGPISASNIE VDMIVQNVAH
DNTTDFTFTV HRNEYEKAQS VLENTAREIG AREVIGDTKI AKVSIVGVGM RSHAGVASRM
FEALAKESIN IQMISTSEIK VSVVIEEKYL ELAVRALHTA FELDAPARQG E
|
|---|
| |