| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3930 |
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| Symbol | fliF |
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| ID | 5871724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4373465 |
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| End bp | 4375243 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641549052 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001670156 |
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| Protein GI | 167034925 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.105617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAG CAGTCGTCGA AAACGCCCCC GCCAAGGCTG GCTCGCCAGC GGCCAAGCCG
CCGTTGTTTG GCATGGCGTT TCTGGAAAAC ATCTCGCAGA TGCCCATGCT GCGCCAGATT
GGCCTCATGG TTGGTCTGGC GGCCAGCGTG GCCATTGGCT TTGCCGTGGT GCTGTGGTCG
CAACAGCCCG ATTACCGTCC GTTGTACGGC AGCCTGTCGG GCATGGACAC CAAGCAGGTC
ATGGATACCC TGGCCGCTGC AGACATCCCC TACAACGTGG AGCCCAACTC GGGTGCTCTG
CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCCGC CGGCGTAGCG
CCAAGCGACG GTAATGTCGG TTTCGAACTG CTCGACAAGG AGCAGGGCCT GGGCACCAGC
CAGTTCATGG AGGCCACTCG CTACCGCCGC AGCCTCGAAG GCGAACTGGC GCGCACTGTT
TCCAGCCTGA ACAACGTCAA GGCCGCGCGC GTGCACCTGG CTATCCCGAA AAGCTCGGTG
TTCGTGCGTG ATGAGCGCAA GCCCAGCGCT TCGGTACTGG TCGAGTTGTA CCCGGGGCGC
GCCTTGGAAG CCGGGCAGGT GATGGCCATC GTCAACCTGG TAGCCACCAG TGTGCCGGAA
CTGGACAAAT CCCAGGTCAC CGTCGTCGAC CAGAAGGGCA ACCTGCTGTC CGAGCAGATC
CAGGATTCAT CACTGACCCA AGCCGGCAAG CAGTTCGACT ACAGCCGCCG GGTAGAGAGC
ATGCTCACCC AGCGTGTGCA CAACATCCTG CAGCCGGTGC TGGGCAACGA CCGTTACAAG
GCCGAAGTGT CCGCCGACCT CGACTTCAGC GCGGTCGAGT CCACCTCCGA ACAGTTCAAT
CCCGACCAGC CGGCACTGCG CAGCGAGCAG TCGGTCGATG AACAACGTGC CAGCAGCCAA
GGCCCGCAAG GCGTGCCAGG CGCGCTGAGC AACCAGCCGC CGGGCGCCGC GTCGGCACCG
CAAACCACCG GTGGCGCTGC CACGCCAGCT TCGGCCATTC AGCCGGGCCA GCCGCTGGTC
GATGCCAACG GCCAGCAGAT CATGGACCCA GCCACCGGCC AGCCGATGCT CGCGCCGTAC
CCGTCAGATA AACGTCAGCA AAGCACCAAG AACTTCGAAC TGGACCGTTC CATCAGCCAT
ACCCGCCAGC AGCAAGGCCG CATGACCCGT CTGTCGGTGG CGGTGGTGGT GGACGATCAG
GTCAAGCTCG ACCCTGCCAC GGGTGACGCC ACCCGTGCGC CGTGGGCTGC CGAGGACCTG
GCGCGCTTTA CCCGCCTGGT GCAGGACGCC GTCGGCTTCG ATGCCAGCCG TGGCGACAGC
GTGACGGTGA TCAACGTGCC GTTCGCCGCC GACCGTGGCG AGGAAATCGC CGACATCGCC
TTCTACCAGC AGCCGTGGTT CTGGGACATC GTCAAGCAGG TGCTGGGTGT GGTGTTCATC
CTGGTGCTGG TGTTCGGTGT GCTGCGGCCG GTGCTCAACA ATATTACAGG GGGCGGCAAG
CAGGCTGCCT CGGATAGCGA CATGGAGCTG GGCGGCATGA TGGGTCTGGA TGGCGAGTTG
GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGCTGCCTAG CCCGAGCGAG
GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTC
GCCCAGGTCG TGAAAGACTG GATCAACGCC GATGAGTGA
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| Protein sequence | MAEAVVENAP AKAGSPAAKP PLFGMAFLEN ISQMPMLRQI GLMVGLAASV AIGFAVVLWS
QQPDYRPLYG SLSGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA
PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV
FVRDERKPSA SVLVELYPGR ALEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSEQI
QDSSLTQAGK QFDYSRRVES MLTQRVHNIL QPVLGNDRYK AEVSADLDFS AVESTSEQFN
PDQPALRSEQ SVDEQRASSQ GPQGVPGALS NQPPGAASAP QTTGGAATPA SAIQPGQPLV
DANGQQIMDP ATGQPMLAPY PSDKRQQSTK NFELDRSISH TRQQQGRMTR LSVAVVVDDQ
VKLDPATGDA TRAPWAAEDL ARFTRLVQDA VGFDASRGDS VTVINVPFAA DRGEEIADIA
FYQQPWFWDI VKQVLGVVFI LVLVFGVLRP VLNNITGGGK QAASDSDMEL GGMMGLDGEL
ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKDWINA DE
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