Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3910 |
Symbol | fliA |
ID | 5871704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4355161 |
End bp | 4355901 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641549032 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_001670136 |
Protein GI | 167034905 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCA GCGGCTTCAA GATGTACAGC CGGGCGGCGA AAGACGCCCA GTACGAGCTG ATCGAACGCT ACGCCCCGCT GGTCAAGCGC ATCGCTTACC ACTTGTTGGC GCGCTTGCCG GCCAACGTCC AGGTCGAGGA CCTGATCCAG GCCGGCATGA TCGGCCTGCT GGAAGTGGCC AACAAGTACG ACGCCAGCAA GGGCGCCAGC TTTGAAACCT ACGCCGGCAT CCGCATCCGC GGGGCCATGC TGGACGAAGT GCGCAAAGGC GATTGGGCGC CGCGTTCGGT ACACCGCAAC ACTCGTATGG TCAGTGACGC AATGCGTGCG GTTGAGGCTA GAACTGGCCG TGACGCTAAA GATCATGAAG TTGCTGCCGA ACTCCAATTG AGTCTCGATG ATTACTACGG GATCTTGAAC GATACCCTGG GCAGCCGCCT GTTCAGCTTC GACGACCTGT TGCAGGACGG CGAGCACGAA GGGCTGCATG AGGATGGCGC CAGTGGCCAG GTCGAACCTG CGCGTGGCCT GGAAGACGAG CGCTTCCAGG TTGCCCTGAC CGAGGCGATC GCCAACCTGC CGGAGCGTGA GCGCCTGGTG CTGGCGCTGT ACTACGACGA AGAGCTGAAC CTCAAGGAAA TCGGCGAGGT ACTGGGTGTC AGCGAGTCGC GGGTCAGCCA GTTGCACAGC CAGTGTGCCG CGCGCCTGCG CAGCCGCCTG GGGGAATGGC GGGCACGTTG A
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Protein sequence | MNASGFKMYS RAAKDAQYEL IERYAPLVKR IAYHLLARLP ANVQVEDLIQ AGMIGLLEVA NKYDASKGAS FETYAGIRIR GAMLDEVRKG DWAPRSVHRN TRMVSDAMRA VEARTGRDAK DHEVAAELQL SLDDYYGILN DTLGSRLFSF DDLLQDGEHE GLHEDGASGQ VEPARGLEDE RFQVALTEAI ANLPERERLV LALYYDEELN LKEIGEVLGV SESRVSQLHS QCAARLRSRL GEWRAR
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