| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3847 |
|---|
| Symbol | |
|---|
| ID | 5871641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4291246 |
|---|
| End bp | 4292001 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548969 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001670073 |
|---|
| Protein GI | 167034842 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.458014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAC AGCTGCAACC TCTGAAAAAA CCTGCACGTG TCGGCAAGGC CGGCCGCAGC
GGTACCCAGG ACGACATCGT CTACGCGCAT ATTTTCGAGG CGATCCTCGA GCAGCGTCTG
GCCCCGGGCA CCAAGTTGAG CGAGGAAGCG CTGGGCGAAA TCTTTGGCGT CAGCCGCACC
ATCATCCGTC GTGCCTTGTC GCGTCTGGCC CATGAAAGCG TGGTGCTGCT GCGGCCGAAC
CGCGGCGCGG TGGTGGCCAG CCCGACCGTG GAAGAGGCAC GTCAGGTGTT CTTCTCGCGG
CGCATGGTCG AACGCGCCAT TACCGAGTTG GCCGTGCAGC ACGCCACCCT CGACCAGCTC
AACGAGCTGC GGCAGATGGT GCGTGAAGAG CGCGACAGCT TCTCGCGCGG TGATCGCGGC
GCCGGCATTC GCCTTTCCGG CGAGTTCCAC CTCAAGCTGG CCGAAGCGGC GGGCAATGCA
CCGCTGGTGA GTTTCCAGCG CAGCCTGGTA TCGCAGACCT CGCTGATCAT TGCCCAGTAC
GAAAGCGGCA ACCGCTCGCA CTGCTCGTAT GACGAGCACA TGCAACTGAT CGATGCCATC
GAGGCACGTG ATGCCGAGCA GGCAGTGAGC CTGATGATGC ACCACATGGA CCACATCGAC
AGCAAGCTGA ACCTGGATGA GGAGAGTGCC TCGGACGATC TGCATGCGGT GTTCTCGCAT
TTGCTGAAAA AGCCCAAGGT TTCCGCCAAG GGTTGA
|
|---|
| Protein sequence | MNEQLQPLKK PARVGKAGRS GTQDDIVYAH IFEAILEQRL APGTKLSEEA LGEIFGVSRT
IIRRALSRLA HESVVLLRPN RGAVVASPTV EEARQVFFSR RMVERAITEL AVQHATLDQL
NELRQMVREE RDSFSRGDRG AGIRLSGEFH LKLAEAAGNA PLVSFQRSLV SQTSLIIAQY
ESGNRSHCSY DEHMQLIDAI EARDAEQAVS LMMHHMDHID SKLNLDEESA SDDLHAVFSH
LLKKPKVSAK G
|
|---|
| |