| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3782 |
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| Symbol | |
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| ID | 5871575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4206245 |
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| End bp | 4208209 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641548904 |
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| Product | ABC transporter related |
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| Protein accession | YP_001670008 |
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| Protein GI | 167034777 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.972642 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGC CTCTGATCGA GCTGATCGAC ATCCGCAAGT CCTACGGCGG TGTCGATACC
CCCAAGGTCG ACATCCTGCA TGGCATCAGC CTCAGCATCC ACCCCGGCGA GTTCGTCGCC
ATCGTCGGCG CCTCCGGCTC GGGCAAGTCG ACCTTGATGA ACATTCTCGG CTGCCTCGAC
CGTCCCAGCG CCGGCAGCTA CCGTTTCGCC GGCAAGGACG TGGCCGACCT GGACAGCGAC
GAACTGGCCT GGTTACGCCG CGAAGCGTTT GGCTTCGTGT TCCAGGGTTA TCACTTGATC
CCGTCGGGCT CGGCCCAGGA AAACGTCGAA ATGCCTGCCA TCTATGCCGG CATCGACGCC
CGCGAGCGCC ACGCCCGCGC CAGCGCCCTG CTCGGCCGCC TGGGCCTGGC CAGCCGCACC
GGCAACCGCC CGCACCAATT GTCCGGCGGC CAGCAGCAAC GGGTGTCGAT TGCCCGTGCG
CTAATGAACG GCGGCCATAT CATCCTCGCC GACGAACCCA CCGGCGCACT GGACAGCCAC
AGCGGCACCG AGGTGATGGC CTTGCTCGAC GAGCTGGCCA GCCAGGGCCA CGTGATCATC
CTGATTACCC ATGACCGCGA AGTGGCGGCG CGGGCGCAGC GGGTGATCGA AATTCGCGAC
GGTTTGATCA TCAGTGACTC GGCCAGCGAA CAGCCTGCGA TCGACAGCGG CCAAGGCCTG
CAAGCCGAGC AGTTGCGCCA GCGCCTGGAC CGCGGCGCCA CCTTGCGCGG GGCGTGGAAA
GGCGAATTGC TCGAAGCCCT GCAGGCCGCC TGGCGGGTGA TGTGGGTCAA CCGCTTCCGC
ACTGCCCTGA CCCTGCTGGG TATCGTCATC GGCGTGGCCT CGGTGGTGGT GATGCTGGCC
GTGGGCGAAG GCAGCAAGCG CCAGGTCATG GCGCAGATGG CCGCCTTCGG CTCGAACATC
CTCTACCTCA ATGGCAAGCC GGCAACGCTG GGTGAGCCCG CCGGCACCAT CACGCTCGAC
GATGTAGCGG CCATCGGCCA ACTGCCGCAG GTCAAGCATG TAATGCCAGT GATCGGCGAC
AAACTGATGG TGCGCCATGG CAACAACAGC CAGAAGTTCT ATGTGGGCGG CAACAACACC
TTTTTCCCGG AAATCTTCAA CTGGCCGGCG GTGCAAGGCA GCTTCTACAG CGAAGCCGAC
GAGGCCAATG CGGCTGCCGT GGCGGTGATC GGCCAAAAAG TCCGAGAAAA AATGCTCGAC
CCTGGCCGCG ATCCGCTGGG GCAGTACATT CTGATCGGCA ATGTGCCGTT CCAGGTGATC
GGTATCCTCG CAGGCAAAGG CGCAAGCTCC GGCGACCAGG ACAGCGACGG GCGCATCGCC
GTGCCCTACT CGGCGGCCGC GATCCGCCTG TTCGGCCAGC GCGACCCGGA CTACATCGCC
GTCGCCGCCC TCGACTCCAC CCGGGTCAAC CAGGCCGAAG CCGCCATCGA CCAACTGCTG
CGCCAACGCC ACAACGGCCG CCAGGACTTC GAGCTGACCA ACGACGCCGC ATTGATCCAG
GCCGAAGCGC GCACGCAGAA CAGCCTGTCG CTGATGCTGG GCGCGATCGC CGCCATCTCG
CTGCTGGTAG GCGGCATCGG TGTGATGAAC ATCATGCTGA TGACCGTACG CGAGCGTACA
CGCGAAATCG GCATCCGCAT GGCCACCGGC GCGCGCCAGC GCGACATCCT GCGCCAGTTC
CTCAGCGAGG CGGTGATGCT GTCGATGGTC GGCGGCCTGG CCGGCATCGT TCTGGCCCTG
GCCATCGGCG GAGGCCTGAT GCTGGCCGAC GTAGCAATCG CCTTTGCCCT GCCCGCCATG
CTTGGCGCGT TCGCCTGCGC CGTTGTCACC GGCATCGTGT TCGGCTTCAT GCCAGCACGC
AAGGCCGCCC GCCTCGACCC GGTCAAAGCC CTTACCAGCG AATAA
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| Protein sequence | MSTPLIELID IRKSYGGVDT PKVDILHGIS LSIHPGEFVA IVGASGSGKS TLMNILGCLD
RPSAGSYRFA GKDVADLDSD ELAWLRREAF GFVFQGYHLI PSGSAQENVE MPAIYAGIDA
RERHARASAL LGRLGLASRT GNRPHQLSGG QQQRVSIARA LMNGGHIILA DEPTGALDSH
SGTEVMALLD ELASQGHVII LITHDREVAA RAQRVIEIRD GLIISDSASE QPAIDSGQGL
QAEQLRQRLD RGATLRGAWK GELLEALQAA WRVMWVNRFR TALTLLGIVI GVASVVVMLA
VGEGSKRQVM AQMAAFGSNI LYLNGKPATL GEPAGTITLD DVAAIGQLPQ VKHVMPVIGD
KLMVRHGNNS QKFYVGGNNT FFPEIFNWPA VQGSFYSEAD EANAAAVAVI GQKVREKMLD
PGRDPLGQYI LIGNVPFQVI GILAGKGASS GDQDSDGRIA VPYSAAAIRL FGQRDPDYIA
VAALDSTRVN QAEAAIDQLL RQRHNGRQDF ELTNDAALIQ AEARTQNSLS LMLGAIAAIS
LLVGGIGVMN IMLMTVRERT REIGIRMATG ARQRDILRQF LSEAVMLSMV GGLAGIVLAL
AIGGGLMLAD VAIAFALPAM LGAFACAVVT GIVFGFMPAR KAARLDPVKA LTSE
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