| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3760 |
|---|
| Symbol | sucA |
|---|
| ID | 5871553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4184260 |
|---|
| End bp | 4187091 |
|---|
| Gene Length | 2832 bp |
|---|
| Protein Length | 943 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641548882 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001669986 |
|---|
| Protein GI | 167034755 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0361197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAA GCGTGATGCA GCGCATGTGG GATAGCGCCC ACCTTTCAGG TGGTAACGCT
GCATATGTGG AAGAGCTCTA CGAACTCTAC CTGCACGACC CTAACGCTGT GCCAGAAGAG
TGGCGCACTT ACTTCCAGAA GTTGCCAGCC GACGGCAGCA CCGCTACCGA TGTATCGCAC
TCGACAATCC GCGACCATTT CGTACTGCTG GCAAAGAACC AGCGCCGCGC CCAACCGGTT
TCCGCCGGGA GCGTGAGCAG TGAACACGAG AAGAAGCAGG TTGAAGTTCT GCGACTGATC
CAGGCCTATC GTATGCGCGG CCATCAGGCT GCCAAGCTCG ACCCGTTGGG GTTGTGGCAG
CGCCCTGCGC CCGTAGACCT GTCGATCAAT CACTACGGCT TGACCAATGC CGATCTTGAT
ACGACCTTCC GTGCCGGCGA CCTGTTCATC GGCAAAGAGG AGGCGAGCCT ACGCGACATC
TTCGATGCAC TCCAGAAGAC ATATTGTCGC ACCATTGGCG CCGAATTCAC CCACATCGTC
GATTCCGAGC AGCGCAGCTG GTTCCAGCAG CGCCTGGAAA GCGTGCGCGG CCGTCCGGAG
TTTTCCGCTG ACGTGCAGGC CCACCTGCTC GAGCGCGTGA CCGCCGGTGA GGGCCTGGAA
AAATACCTGG GCACCAAGTA CCCGGGCACC AAGCGCTTCG GCCTTGAAGG TGGCGAGAGC
CTGATCCCGA TGCTGGATGA AATGATCCAG CGTTCCGGCT CCTACGGGAC CAAGGAAGTC
GTGATCGGCA TGGCTCACCG TGGCCGCCTG AACGTCCTGG TGAACACCTT CGGCAAGAAC
CCGCGCGAGC TGTTCGACGA GTTCGAAGGC AAGAAGATGA ACGAGCTGGG CTCCGGTGAC
GTGAAGTATC ACCAGGGCTT CTCCTCGAAC GTGATGACCA CCGGTGGCGA AGTTCACCTG
GCCATGGCGT TCAACCCGTC CCACCTGGAA ATCGTTTCGC CTGTGGTCGA AGGTTCGGTG
CGCGCCCGTC AGGATCGCCG CAACGACACC GTTGGCGACA AGGTGCTGCC GATCTCGATC
CACGGCGACG CAGCATTCGC CGGCCAGGGC GTGGTCATGG AAACCTTCCA GATGTCGCAG
ACCCGCGGTT TCAAGACCGG CGGCACCGTG CACATCGTGA TCAACAACCA GGTTGGCTTC
ACCATCAGCA ACCCGCTGGA CGCGCGCTCC ACCGAGTACG CCACCGACGT TGCCAAGATG
ATCCAGGCGC CGATCCTGCA CGTGAACGGC GATGACCCGG AAGCGGTGCT GTTCGTCACC
CAGCTGGCCA TCGACTACCG CATGCAGTTC AAGCGTGACG TGGTCATCGA CCTGGTCTGC
TACCGTCGTC GCGGCCACAA CGAGGCTGAC GAGCCGAACG GCACCCAGCC GCTGATGTAC
CAGCAGATCA GCAAGCAGCG CACCACTCGC GAGCTGTATG CAGAAGCGCT GATCCAGGCC
GGTCGCATCG ATGCCGAGCG TGCTCAGGCC AAGATCGACG AGTACCGCAA CGCCCTGGAC
AATGGCCTGC ATGTAGTGAA GAGCCTGGTC AAGGAACCGA ACCGCGAGCT GTTCGTCGAC
TGGCGTCCTT ACCTGGGCCA TGCCTGGACC GCGCGTCACG ACACCCGCTT CGACCTCAAG
ACCCTCCAGG ACCTGTCGGC CAAGCTGCTC GAGCTGCCAG AAGGTTTCGT GGTCCAGCGT
CAGGTATCGA AGATCTACGA AGACCGTCAG AAGATGCAGG CCGGTGGCTT GCCGATCAAC
TGGGGTTATG CAGAGACCAT GGCCTACGCC ACCCTGCAGT TCGAAGGTCA CCCGATCCGC
ATGACCGGCC AGGACATCGG CCGTGGCACC TTCTCGCACC GTCACGCGGT GCTGCACAAC
CAGAAGGACG CCAGCACCTA CATTCCGCTG CAGAACCTGT TCCCAGGCCA GCCACGTTTC
GACCTGTACG ATTCGTTCCT GTCCGAGGAA GCGGTACTGG CGTTCGAATA CGGCTATTCC
ACCACCACGC CGAACGCGTT GGTGATCTGG GAAGCCCAGT TCGGCGACTT CGCCAACGGT
GCACAAGTGG TGATCGACCA GTTCATCACC AGCGGTGAGC ACAAGTGGGG CCGCCTGTGC
GGTCTGACCA TGCTGCTGCC ACACGGTTAT GAAGGGCAGG GCCCGGAGCA CTCCTCCGCG
CGTCTGGAGC GTTACCTGCA GCTGTGCGCC GAGCACAACA TCCAGGTCTG CGTACCGACC
ACCCCAGCAC AGATCTACCA CCTGCTGCGT CGCCAGGTCA TCCGTCCGCT GCGCAAGCCG
CTGGTGGTCC TGACGCCGAA GTCGCTGCTG CGCCACAAAC TGGCCATCTC GACGCTGGAA
GACCTGGCAG AAGGCTCGTT CCAGACCGTG ATCCCGGAAA TCGACGCAAT CGATCCGGCC
AAGGTCGAGC GCCTGGTGCT GTGCAGCGGC AAGGTCTACT ACGACCTGCT GGAAAAACGC
CGTGCCGAAG GCCGTGAAGA CATCGCCATC CTGCGTCTCG AGCAGCTGTA CCCGTTCCCG
GAGGACGACC TGGTCGAAAT CCTGGCGCAA TACAGCAACC TCAAGCACGC CGTATGGTGC
CAGGAAGAGC CGATGAACCA GGGCGCCTGG TACAGCAGTC AGCATCACAT GCGCCGTATC
CTGGGCCGCC ACAACAAGGC ATTGGTCCTG GAGTACGCCG GTCGCGACGC TTCTGCCGCG
CCAGCCTGTG GTTACGCTTC GAAGCACGCC GAACAGCAGG AAAAACTGCT GCAAGACGCC
TTCACTGTCT AA
|
|---|
| Protein sequence | MQESVMQRMW DSAHLSGGNA AYVEELYELY LHDPNAVPEE WRTYFQKLPA DGSTATDVSH
STIRDHFVLL AKNQRRAQPV SAGSVSSEHE KKQVEVLRLI QAYRMRGHQA AKLDPLGLWQ
RPAPVDLSIN HYGLTNADLD TTFRAGDLFI GKEEASLRDI FDALQKTYCR TIGAEFTHIV
DSEQRSWFQQ RLESVRGRPE FSADVQAHLL ERVTAGEGLE KYLGTKYPGT KRFGLEGGES
LIPMLDEMIQ RSGSYGTKEV VIGMAHRGRL NVLVNTFGKN PRELFDEFEG KKMNELGSGD
VKYHQGFSSN VMTTGGEVHL AMAFNPSHLE IVSPVVEGSV RARQDRRNDT VGDKVLPISI
HGDAAFAGQG VVMETFQMSQ TRGFKTGGTV HIVINNQVGF TISNPLDARS TEYATDVAKM
IQAPILHVNG DDPEAVLFVT QLAIDYRMQF KRDVVIDLVC YRRRGHNEAD EPNGTQPLMY
QQISKQRTTR ELYAEALIQA GRIDAERAQA KIDEYRNALD NGLHVVKSLV KEPNRELFVD
WRPYLGHAWT ARHDTRFDLK TLQDLSAKLL ELPEGFVVQR QVSKIYEDRQ KMQAGGLPIN
WGYAETMAYA TLQFEGHPIR MTGQDIGRGT FSHRHAVLHN QKDASTYIPL QNLFPGQPRF
DLYDSFLSEE AVLAFEYGYS TTTPNALVIW EAQFGDFANG AQVVIDQFIT SGEHKWGRLC
GLTMLLPHGY EGQGPEHSSA RLERYLQLCA EHNIQVCVPT TPAQIYHLLR RQVIRPLRKP
LVVLTPKSLL RHKLAISTLE DLAEGSFQTV IPEIDAIDPA KVERLVLCSG KVYYDLLEKR
RAEGREDIAI LRLEQLYPFP EDDLVEILAQ YSNLKHAVWC QEEPMNQGAW YSSQHHMRRI
LGRHNKALVL EYAGRDASAA PACGYASKHA EQQEKLLQDA FTV
|
|---|
| |