| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3712 |
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| Symbol | |
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| ID | 5871505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4126197 |
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| End bp | 4128470 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548834 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001669938 |
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| Protein GI | 167034707 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.709841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTCG GAGGTAGCCA CCTGATGTAC AAGGACCTCA AGTTCCCGAT CCTCATCGTC
CACCGGGCTA TCAAGGCTGA CAGTGTCGCC GGGGAGCGCG TGCGGGGCAT CGCCGAGGAA
CTGCGCCAGG ACGGTTTCGC CATTCTGGCC GCCGCCGACC ACGCCGAAGC GCGCCTGGTT
GCCGCCACTC ACCACGGCCT GGCCTGCATG CTGATTGCCG CCGAAGGAGT TGGCGAAAAC
ACCCACCTGC TGCAGAACAT GGCCGAGCTG ATCCGCCTGG CGCGCATGCG CGCGCCCGAC
TTGCCGATCT TCGCCTTGGG CGAGCAGGTG ACCCTGGAAA ACGCCCCTGC CGAAGCCATG
AGCGAGCTCA ACCAACTGCG TGGCATCCTT TACCTGTTCG AAGACACCGT GCCGTTTCTC
GCCCGCCAGG TGGCGCGTGC CGCACACACC TACCTTGACG GTCTGCTGCC ACCGTTCTTC
AAGGCCCTGG TGCAGCATAC CGCGCAGTCC AACTATTCCT GGCATACCCC GGGCCATGGC
GGTGGCGTGG CCTATCATAA AAGCCCGGTA GGCCAGGCCT TCCACCAGTT CTTCGGGGAA
AACACCCTGC GCTCGGACCT GTCTGTTTCA GTGCCGGAGC TGGGCTCGCT GCTCGACCAC
ACAGGCCCCT TGGCCGAAGC CGAGGCCAGG GCGGCGCGCA ACTTCGGTGC CGACCACACC
TTCTTCGTCA TCAATGGCAC CTCCACAGCC AACAAGATTG TCTGGCACGC CATGGTCGGT
CGCGACGACC TGGTGTTGGT GGACCGCAAC TGCCATAAGT CAGTGGTGCA CGCGATCATC
ATGACCGGCG CCATTCCGCT GTACCTGTGC CCAGAGCGCA ACGAGCTGGG CATCATCGGC
CCGATCCCGC TCAGCGAGTT CAGCCCCGAG GCAATCGAGG CGAAGATCCA GGCCAACCCC
CTTGCCCATG GCCGTGGGCA ACGTATCAAG CTGGCGGTAG TGACCAACTC CACCTATGAC
GGGCTGTGCT ACCACGCCGG GATGATCAAG CAGGCCCTGG GTGCCAGCGT GGAAGTACTG
CACTTCGACG AGGCCTGGTT CGCTTATGCG GCGTTTCACG GCTTCTTCAC CGGGCGCTAT
GCCATGGGCA CTGCCTGCGC AGCCGACAGC CCGTTGGTGT TCAGCACCCA TTCCACCCAC
AAGCTGCTGG CGGCGTTCAG CCAGGCCTCG ATGATCCATG TGCAGGACGG GGCCAGGCGG
CAGCTGGACC GGGACCGCTT CAACGAAGCG TTCATGATGC ATATCTCGAC TTCGCCGCAG
TACAGCATCC TTGCCTCGCT GGACGTGGCC TCGACCATGA TGGAAGGGCA GGCCGGGCAT
TCGCTGTTGC AAGAAATGTT CGATGAGGCG CTGAGTTTTC GTCGTGCCCT GGCCAACCTG
CGCGAGCACA TTGCTGCGGA TGACTGGTGG TTCAGTATTT GGCAGCCGCC CAGCACTGAA
GGCATCCAGC CCTTGGCCGC GCAGGACTGG CTGCTGCAGC CGGGGGCGCA GTGGCATGGC
TTTGGTGAGG TGGCGGACGG CTACGTGTTG CTCGACCCTC TGAAGGTGAC CCTGGTAATG
CCGGGGCTGA GTGCGGGCGG TGTGCTGGGT GAGCGTGGCA TCCCGGCGGC GGTGGTCAGC
AAGTTTCTCT GGGAGCGCGG GCTGGTGGTG GAAAAAACCG GCTTGTACAG CTTCCTGGTG
CTGTTTTCCA TGGGCATCAC CAAGGGCAAG TGGAGCACCT TGCTCACCGA ACTGCTGGAG
TTCAAGCGCC ACTATGACGG CAATACACCG CTGAGCAGTT GCCTGCCGAG TGTGGGGGTT
GCCGATGCCT CACGCTACCG GGGCATGGGC CTGCGCGACC TGTGTGAACA GTTGCATGAC
TGCTACCGTG CCAATGCCAC GGCCAAGCAG CTGAAGCGGG TGTTCACGCG TTTGCCGGAG
GTGGCCGTGA GCCCCGCTCG GGCTTATGAC CAGATGGTAC GTGGCGAGGT GGAAGCGGTG
CCGATCGAAG CTTTGCTGGG CCGTGTGGCC GCGGTGATGC TGGTGCCGTA CCCGCCCGGT
ATTCCGTTGA TCATGCCGGG AGAGCGGTTC ACCGAGGCGA CCCGCTCGAT ACTTGACTAC
TTGGCCTTCG CCCGAGCCTT CAACCAAGGC TTTCCGGGGT TTGTCGCGGA TGTTCACGGC
CTGCAGAACG AAAATGGCCG CTACACCGTG GATTGCATCA TGGAATGCGA GTGA
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| Protein sequence | MSFGGSHLMY KDLKFPILIV HRAIKADSVA GERVRGIAEE LRQDGFAILA AADHAEARLV
AATHHGLACM LIAAEGVGEN THLLQNMAEL IRLARMRAPD LPIFALGEQV TLENAPAEAM
SELNQLRGIL YLFEDTVPFL ARQVARAAHT YLDGLLPPFF KALVQHTAQS NYSWHTPGHG
GGVAYHKSPV GQAFHQFFGE NTLRSDLSVS VPELGSLLDH TGPLAEAEAR AARNFGADHT
FFVINGTSTA NKIVWHAMVG RDDLVLVDRN CHKSVVHAII MTGAIPLYLC PERNELGIIG
PIPLSEFSPE AIEAKIQANP LAHGRGQRIK LAVVTNSTYD GLCYHAGMIK QALGASVEVL
HFDEAWFAYA AFHGFFTGRY AMGTACAADS PLVFSTHSTH KLLAAFSQAS MIHVQDGARR
QLDRDRFNEA FMMHISTSPQ YSILASLDVA STMMEGQAGH SLLQEMFDEA LSFRRALANL
REHIAADDWW FSIWQPPSTE GIQPLAAQDW LLQPGAQWHG FGEVADGYVL LDPLKVTLVM
PGLSAGGVLG ERGIPAAVVS KFLWERGLVV EKTGLYSFLV LFSMGITKGK WSTLLTELLE
FKRHYDGNTP LSSCLPSVGV ADASRYRGMG LRDLCEQLHD CYRANATAKQ LKRVFTRLPE
VAVSPARAYD QMVRGEVEAV PIEALLGRVA AVMLVPYPPG IPLIMPGERF TEATRSILDY
LAFARAFNQG FPGFVADVHG LQNENGRYTV DCIMECE
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