| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3672 |
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| Symbol | |
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| ID | 5871465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4087285 |
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| End bp | 4087830 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641548795 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001669899 |
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| Protein GI | 167034668 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.309643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000290511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | TTGATTAGGG TCTTAGTGGT CGATGATCAC GATCTGGTAC GAACCGGTAT TACCCGCATG
CTGGCCGACA TCGATGGCTT GCAGGTGGTG GGTGAGGGGG ATTCAGGCGA GTCGGCACTC
AAGCTGGCCA GAGAGCTGAA GCCGGACGTG GTGCTGATGG ACGTGAAAAT GCCAGGCATC
GGCGGGCTGG AAGCCACCCG CAAGCTGCTG CGCAGCCACC CGGACATCAA GGTGGTGGCG
GTGACGGTGT GCGAGGAAGA CCCGTTCCCC ACACGTTTGC TGCAGGCCGG CGCTGCTGGC
TACCTGACCA AGGGCGCAGG CCTCGATGAA ATGGTTCAGG CCATTCGCCT GGCTTTTGCC
GGCCAGCGTT ACATCAGCCC GCAGATTGCC CAGCAGCTGG CGCTGAAACC GTTCCAGCCA
CAGGGCTCGC CGTTCGACAC ATTGTCCGAA CGGGAAATCC AGATTGCCCT GATGATCGTC
GGCTGCCAAA AGGTGCAGAT CATCTCTGAC AAGTTGTGCC TCTCGCCCAA GACCGTCAAT
ACTTAA
|
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| Protein sequence | MIRVLVVDDH DLVRTGITRM LADIDGLQVV GEGDSGESAL KLARELKPDV VLMDVKMPGI
GGLEATRKLL RSHPDIKVVA VTVCEEDPFP TRLLQAGAAG YLTKGAGLDE MVQAIRLAFA
GQRYISPQIA QQLALKPFQP QGSPFDTLSE REIQIALMIV GCQKVQIISD KLCLSPKTVN
T
|
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