Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3658 |
Symbol | |
ID | 5871450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4067686 |
End bp | 4071006 |
Gene Length | 3321 bp |
Protein Length | 1106 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548780 |
Product | trehalose synthase |
Protein accession | YP_001669885 |
Protein GI | 167034654 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.100309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000190821 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCAAGC GTGCCCGCAC GGCAGCCTTC ATCGACGACC CGCTGTGGTA CAAGGACGCC GTCATCTACC AGTTGCATAT CAAGTCGTTC TTCGATTCGA ACAATGATGG TATCGGCGAC TTCGCCGGCC TGATCAGCAA ACTCGACTAC ATCGCCGAGC TGGGCGTCAA CACCCTGTGG CTGCTGCCGT TCTACCCCTC GCCTCGGCGC GATGACGGCT ACGACATTGC CGATTACAAA GCCGTGCACC CCGACTACGG CAGCCTGGGC GATGCCCGGC GTTTCATCGC CGAGGCACAT AAGCGCGGCT TGCGGGTGAT CACCGAGCTG GTCATCAACC ACACCAGCGA CCAGCACCCG TGGTTTCAGC GTGCCCGCCA TGCCAAACGC GGCAGCAAGG CGCGCGATTT CTACGTGTGG TCGGACGACG ACCAGAAATA CGACGGCACG CGCATCATCT TCCTCGACAC CGAAAAGTCC AACTGGACAT GGGACCCGGT CGCTGGCCAG TACTTCTGGC ACCGCTTCTA CGCGCACCAG CCAGACCTCA ACTTCGACAA CCCGCAAGTA CTCAAGGCGG TGATCGGCGT GATGCGCTTC TGGCTCGACC TGGGTGTCGA CGGCCTGCGC CTGGACGCCA TCCCGTACCT GATCGAACGC GACGGCACCA ACAACGAGAA CCTCGCCGAA ACCCACGACG TGCTCAAGGC GATCCGCGCA GAAATCGACG CCAACTACCC CGACCGCATG CTGCTGGCCG AAGCCAACCA GTGGCCGGAA GACACGCGTC CATACTTCGG CGAAGGCGAG GGCGACGAAT GTCACATGGC CTTCCACTTT CCGTTGATGC CACGCATGTA CATGGCCCTG GCCATGGAAG ACCGCTTCCC GATCACCGAC ATCCTGCGCC AGACCCCGGA AATTCCCGCC AACTGCCAAT GGGCGATTTT CCTGCGCAAC CACGATGAGC TGACCCTGGA AATGGTCACC GACCGCGAGC GCGACTACCT GTGGAACTAC TACGCCGAAG ACCGCCGCGC GCGCATCAAC CTGGGTATCC GCCGGCGCCT GGCGCCGCTG CTGCAGCGTG ACCGTCGGCG CATCGAGCTG CTCACCAGCC TGCTGCTGTC GATGCCCGGC ACACCAACCC TGTATTACGG CGACGAACTG GGCATGGGCG ACAACATCTA CCTGGGTGAT CGCGATGGCG TGCGTACGCC CATGCAGTGG TCGCCGGACC GCAACGGCGG GTTCTCCCGC GCCGACCCGC AGCGCCTGGT GCTGCCGCCG ATCATGGACC CGCTGTACGG CTACCAGACC GTCAATGTCG AAGCGCAAAG CCACGACCCG CATTCACTGC TGAACTGGAC CCGGCGCATG CTGGCGGTGC GCAAGCAGCA GAAGGCCTTT GGCCGCGGCA GCCTGCGCAC GCTCACGCCC AGCAACCGGC GCATTCTCGC CTACGTCCGC GAGTACACCG ATGTCGACGG CAACACCGAG GTCATTCTGT GCGTGGCCAA CGTGTCGCGC GCTGCCCAGG CCGCAGAACT GGAATTGTCA CACTTCGCCG ACAAAGTACC GGTGGAGATG CTCGGCGGCA GCGCCTTCCC GCCCATTGGC CAGTTGCCGT TCCTGCTGAC CTTGCCACCC TATGCCTTCT ACTGGTTCCT GCTGGCCAGC CGTGACCGCA TGCCCAGCTG GCATATCCAG CCCACCGAGG GGTTACCTGA ATTGACCACG CTGGTACTGC GCAAGCGCAT GGAAGAACTA CTGGAAGCAC CTTCAAGCGA TACCCTGCAA GCCACCATCC TGCCGCAATA CCTGCCCAAG CGGCGTTGGT TCGCCGGCAA GGAAGGGCCG ATCGACGCCG TGCGCCTGTG TTACGGCGTG CGTTTTGGCA CTGCCACCAC ACCGGTGCTG CTCAGTGAAA TCGAAGTGCG CAGCGACGGC ACGGCCACCC GCTACCAACT GCCGTTCGGC CTGCTGCGCG AGGAGCAGAT CACTACCGCG CTGCCGCAGC AGTTGGCCTT GTCGCGGGTG CGCCGCGCCC ACCAGGTTGG CTTGATCACA GATGCCTTCG TGCTGGAGCC GTTCATCCGC GCCGTGATGC TTGCCTGCCA AGATGGCCTG CGCCTGCCAT GCGGCAACGA TGAGGGTGAA TTGCGCTTCG AATGCACGGC GCAATTGGCC GGCCTGGCTC TCGACGAGGA AAGTGAAGTG CGCTACCTCA GCGCCGAACA GTCCAACAGT TCGGTAGTGA TCGGCGACCG GGTGGTGCTC AAGCTGATCC GCCGGGTCAA CCCAGGTGTT CATCCAGAGC TGGAAATGAG TGCCTACCTG ACCGCCGCCG GCTTTGCCAA CATCTCGCCG CTGCTGGCCT GGGTCAGCCG AGTGGATGAG CAGCAGGCAC CGCACCTGCT GATGATTGCC CAGGGTTACC TGAACAACCA GGGCGATGCC TGGGGCTGGA CCCAGAACAC CCTTGAACGG GCCATTCGCG ACCAGATGGA GCCCACCACC AGCGACCCCG AGGCGCACAC CGACGCACTG GCCGAGCTCA GTGGCTTCGC TGCCTTGCTT GGCCAGCGCC TGGGCGAGAT GCACCTGTTG CTGGCCGCGC CAACCGAAGA CCCGGCCTTC CAGCCACGTC CCAGCAATGC GCAGGACAGC CAGCGTTGGA GTACGCAGAT CAGCGCCGAG CTGACCCACG CTCTCGACCT GCTGGCCCAA CACCGCGACA CGCTCGACCG CGATAGCCAG GCCCTGGTCG ATGACCTGCA GCAGCAGCGC GACGGCCTGG CCCAGCACAT CGACAATCTG ACCGACCAGG CCCAGGGCGG CCTGTTGATG CGGGTGCATG GCGACCTGCA CCTGGGCCAG GTGCTGGTGG TGCAAGGTGA TGCCTACCTG ATCGATTTCG AAGGCGAGCC GGCCCGGTCG CTGGAAGAGC GTCGGGCAAA ACACAGCCCG TACAAGGATG TCAGCGGCGT GCTGCGATCC TTCGACTATG CTGCTGCGAT GATCTTGCGC AGCGCGTCTG CGGTGGACCT TTCAGACCCG GCGCGGCAGG CCCGGCAACG GGTTGCCCGG CAGTACCTGC ACCAGTCGCG GCATGCCTTT GTCGAAGCCT ATGGCCTGGC CACCGCCGCC ATGCCCCACG CCTGGCAGCG GGCCGAGGGC GAGCGCGCGG CTCTGGAGCT GTTCTGCCTG GAAAAAGCCG CCTACGAGAT TACCTACGAA GCCGAGAACC GTCCGAGTTG GCTGGCCGTG CCTTTGCATG GCCTGCATGG ATTGATCAGT ACCTGGGGAG AGTCAGAATG A
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Protein sequence | MAKRARTAAF IDDPLWYKDA VIYQLHIKSF FDSNNDGIGD FAGLISKLDY IAELGVNTLW LLPFYPSPRR DDGYDIADYK AVHPDYGSLG DARRFIAEAH KRGLRVITEL VINHTSDQHP WFQRARHAKR GSKARDFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYAHQ PDLNFDNPQV LKAVIGVMRF WLDLGVDGLR LDAIPYLIER DGTNNENLAE THDVLKAIRA EIDANYPDRM LLAEANQWPE DTRPYFGEGE GDECHMAFHF PLMPRMYMAL AMEDRFPITD ILRQTPEIPA NCQWAIFLRN HDELTLEMVT DRERDYLWNY YAEDRRARIN LGIRRRLAPL LQRDRRRIEL LTSLLLSMPG TPTLYYGDEL GMGDNIYLGD RDGVRTPMQW SPDRNGGFSR ADPQRLVLPP IMDPLYGYQT VNVEAQSHDP HSLLNWTRRM LAVRKQQKAF GRGSLRTLTP SNRRILAYVR EYTDVDGNTE VILCVANVSR AAQAAELELS HFADKVPVEM LGGSAFPPIG QLPFLLTLPP YAFYWFLLAS RDRMPSWHIQ PTEGLPELTT LVLRKRMEEL LEAPSSDTLQ ATILPQYLPK RRWFAGKEGP IDAVRLCYGV RFGTATTPVL LSEIEVRSDG TATRYQLPFG LLREEQITTA LPQQLALSRV RRAHQVGLIT DAFVLEPFIR AVMLACQDGL RLPCGNDEGE LRFECTAQLA GLALDEESEV RYLSAEQSNS SVVIGDRVVL KLIRRVNPGV HPELEMSAYL TAAGFANISP LLAWVSRVDE QQAPHLLMIA QGYLNNQGDA WGWTQNTLER AIRDQMEPTT SDPEAHTDAL AELSGFAALL GQRLGEMHLL LAAPTEDPAF QPRPSNAQDS QRWSTQISAE LTHALDLLAQ HRDTLDRDSQ ALVDDLQQQR DGLAQHIDNL TDQAQGGLLM RVHGDLHLGQ VLVVQGDAYL IDFEGEPARS LEERRAKHSP YKDVSGVLRS FDYAAAMILR SASAVDLSDP ARQARQRVAR QYLHQSRHAF VEAYGLATAA MPHAWQRAEG ERAALELFCL EKAAYEITYE AENRPSWLAV PLHGLHGLIS TWGESE
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