| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3519 |
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| Symbol | |
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| ID | 5871306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3924631 |
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| End bp | 3926676 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641548636 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001669746 |
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| Protein GI | 167034515 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.302801 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.288365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA ATAGCGTTGC CAGGGCCCAT TCGCCCGATG TCGTCGTCAT GGATCCGCTG
GTGGTTACCG GCGCCTACAC GCCCACCAGC AGCTTTGACC TGCCGTTTTC GGTCGATACC
GTTGACCTGT CCCACGGCAC TGATGGCCAG CTTGGCGTCA ACCTGTCGGA AGTGCTGAGC
AAGGTGCCCG GCCTGGTGGT GCAGAACCGG CAGAACTATG CCCAGGACCT GCAGATTTCC
TCACGGGGCT ACGGTGCCCG TTCAGCGTTC GGTGTGCGCG GTATCAAGTT GCTGAGCGAT
GGTATTCCTG CCAGTACCCC CGACGGGCAA GGGCAGGCAG CCACGCTGAA CCTGGACGTG
GCCGAGCGCA TCGAGGTGCT GCGTGGCCCG GCTGCGACGT TGTATGGCAG CAACGCCGGT
GGCGTGATCC AGATGTTCAC CCGCGACGGG CAGGGCCCGG CCCGCGTTGG CGCTGAAACC
ACGTTCGGCA GTGACGGCTT CAACAAGAAT CACCTGTCCG CCGAGGGCGG TAACGACACC
GCCGGTTTCG TGCTGGATGC CTCGCGCATG GACACCGATG GTTACCGCGA CCACAGTGCA
GCACGCCGCG ACCAGACGTT CGCCAAGGTC AATTTCAAGC CCGACGACGA CTCGCGCATG
GCGCTGATCT ACAGCAGCCT GGAGCAGAAC GACACGCAGG ACCCGCTGGG GCAGAAGTGG
GATGCCTACA AGCACGACCC TCGTTCTACC GCGGTCGAGG CAGAGAAATA CAACACGCGT
AAAAGCATCG ATCATCAACA GCTGGGCATG AACTACGAGC GCTATTTCGG TGATGCCACA
TTGCAGTTCA ACCTGTACGC GGGGCGACGC AGTGTTGTGC AGTACCTGTC CATATCAGAA
AAAGCACCTT CAAACGTGCA GCGTGGTGGC GGAGTCGTTG ACTTCGACCG CGAATTCCAC
GGCGGCACCC TGCGCTGGAT CCAGCCGGTT GTCGAGGTGC CCGGTAACCT CACGTTCACC
GTCGGCGCCG ATTACGACCA GAGCACGGAT GACCGCCGCG GCTACCAGAA CTTCAGCGGC
GACCAGTTGG GCGTCAAGGG CGAACTGCGC CGCGACGAGC AGGACACGGC CACCAGCCTG
GACCCCTACC TGCAGGCGCA CTGGGAAATC GGCAACTGGA CCAGCGAACT GGGGCTGCGC
TACAGCACCA TGAAAATGCG CGTCGATGAC CATTACCTGG CCAACGGTGA TTCGAGTGGT
TCGAAGACGT ACCAGCAGGC CACCCCGTCG CTGTCGGTGA TGTATGCGTT CACCCCCGAC
CTGCGCGGCT ACGCAAGCGT TGGTAAAGGT TTCGAAACCC CCACGCAGGC CGAAATGGCC
TATGCGCCGG GTGAGGTCGA ACGTTTCAAC TTCGGGCTCA AACCTGCCAC CAGCATGCAG
TATGAAGTGG GTGTGAAGTA TCGCCTGGGC GAACGCACGC GCTTGAATGC GGCGGTGTAT
GAAATTCAAA CCGATGACGA AATCGTCGTT GCCAACGCTA CGGCTGGCCG CACCAGTTAT
CGCAATGCAG GGCGCACGAC AAGACGCGGT TTCGAGGCGA GCCTGCAGAG TGACCTGGGC
GAGCAATGGC AGACCACGGT GGTGTACACC CGCACCGATG CGCGCTATGC CGAAGATGTC
AGTTCGGCCA TCGAACGTGG CAACCGGCTG CCGGGTGTGC CGCTCGACAA CCTGTATGGC
GAGCTGGTGT GGAAACCCGT TCCGTCGGTC AGCATGGGGG TAGAAGGGCA ATACCGCAGC
AAGGTGTATG TGGACGACAG CAACAACGCC AAACCGGCAC CTGCGTATGC CGTATTCAAC
TGGCGGACGC GTTTCGAACA GCACGTCGGG CCCTGGACGT TCCATCAACT GGTGCGTTTG
GACAACCTGT TCGACCGGCA GTATGTGGGG TCGGTGATCG TTGGCGACAG CAACGGGCGT
TATTACGAGG CAGCGCCTGG GCGATCGTGG TATGCGGGGG CGGGGTTGGA GTACCAGTTC
AGATAG
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| Protein sequence | MSANSVARAH SPDVVVMDPL VVTGAYTPTS SFDLPFSVDT VDLSHGTDGQ LGVNLSEVLS
KVPGLVVQNR QNYAQDLQIS SRGYGARSAF GVRGIKLLSD GIPASTPDGQ GQAATLNLDV
AERIEVLRGP AATLYGSNAG GVIQMFTRDG QGPARVGAET TFGSDGFNKN HLSAEGGNDT
AGFVLDASRM DTDGYRDHSA ARRDQTFAKV NFKPDDDSRM ALIYSSLEQN DTQDPLGQKW
DAYKHDPRST AVEAEKYNTR KSIDHQQLGM NYERYFGDAT LQFNLYAGRR SVVQYLSISE
KAPSNVQRGG GVVDFDREFH GGTLRWIQPV VEVPGNLTFT VGADYDQSTD DRRGYQNFSG
DQLGVKGELR RDEQDTATSL DPYLQAHWEI GNWTSELGLR YSTMKMRVDD HYLANGDSSG
SKTYQQATPS LSVMYAFTPD LRGYASVGKG FETPTQAEMA YAPGEVERFN FGLKPATSMQ
YEVGVKYRLG ERTRLNAAVY EIQTDDEIVV ANATAGRTSY RNAGRTTRRG FEASLQSDLG
EQWQTTVVYT RTDARYAEDV SSAIERGNRL PGVPLDNLYG ELVWKPVPSV SMGVEGQYRS
KVYVDDSNNA KPAPAYAVFN WRTRFEQHVG PWTFHQLVRL DNLFDRQYVG SVIVGDSNGR
YYEAAPGRSW YAGAGLEYQF R
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