| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3358 |
|---|
| Symbol | |
|---|
| ID | 5871143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3790495 |
|---|
| End bp | 3792921 |
|---|
| Gene Length | 2427 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548474 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001669586 |
|---|
| Protein GI | 167034355 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.260724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.726447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTG CAAGTCGTCC ATTCCGTAAG CGTGCTTTAG CTGTTGCTGT GCGCGGCTCC
CTTTTTGGCG CAGTTCTGGT GGCAGGGGTT GGCCAGTTGC TGCCAGCCGT CGCGCAGCCC
TTGGACGCGG TGGCCATCCG CACTTACCAG ATTGCCCCGG GCCCGCTAGG GCGGGTCTTG
TCCAGTTTCG CGCTGGCTTG CGGCGTTGCG CTTTCGTTTG AACCGGCATT GACCGATGGC
CTGCACAGCC CCGGGCTTAG CGGCGCCTAT TCGGCGCGGG ATGGTATCGC CCAGTTGCTT
GCCGGCAGCG GCCTTGAGCT GGTGGAGCTG AGTAACGGCA GCTATCAATT GATCCGCCAG
CCAAGCAGTG GTGATAGCCT CACGCTGGCC GCTACCACCA TCGAAGCCAA TGGCATACGC
CACGAAACCT TGCCTGAAGC CTACGCCGGG GGGCAGGTTG CGCGGGGTGG GCGGCTAGGC
ATGCTTGGCA ACAAGGACGT GATGGATACG CCTTTCAGCG TTACCAGCTA CACCGCAAAA
ACCCTCGCCG ACCTGCAGAC GGTTACCGTG GCCGATGCCC TGGAGCGTGA CCCTTCTGTG
CGTTCTACCG GGCAAACGGG TGGCATCGTC GATTCGTTCT TCATTCGCGG GTTCCCGGTG
GGTGAAGGCA ACCTGGGCGA ACTGGCGTTC GATGGTGTGT ACGGGGTTGC CCCCAATTAC
CGCGTGTTCA CCGAATATGC CGAGCGGGTA GAAGTGCTCA AGGGGCCGGG GGCTTTGATG
TACGGTATTT CCCCGAACAG CGGCGTTGGC GGCGTGATCA ACATCGTGCC CAAACGCGCG
CTCGCCGAGG ATTTGACGCG TGTCACCGCC AGCTACAGCT CTGACACCCA GGTGGGTGGC
CACCTCGACA TCAGCCGCCG TTTCGGGGAC CAGCGGCAAT GGGGCGTGCG TTTCAACGGC
AGCCTCGCCC AGGGCGACAC GGCTATCGAT GACCAGCAGC GTGCCTTGGA CATTGGCGCC
ATCGCCCTGG ACTATCAAGG TGAGCGCTTG CGCCTGAACC TGGACTTCAT CAGCCAGAAA
GAGCGTTGGG ATGCCGCCTC GCGGCCCTTC ACCGTAGCGC CTGGCTTCGG TGTGCCCTCT
GCCGCCAGTG GTCGAACCAA CCTGCCGCAG GACTGGGGCT GGTCGAATAC CCGCGAACAA
TCAGCGTTGC TGGGTGGAGA ATATGACATC AGTGACTCAC TGACGGTGTT TGCACATGCC
GGTGGCGGCA GGGCAGATGT GGCGCGGATG TCCGACCAAG TACCGAAAAT TCTCAATGCG
GCGGGCGACA CCAGCAACAC CCCCGGTTAC TACAAGTTCA ACGTCGATCG TTCCACCGCC
GATGTGGGGC TGCGTGCGCT GTTTGAAACC GGAGCGGTCA ATCATACGGT AACGGCCATG
GCTACCCGCT ACCAGGATGA GCTGTCACGC GGCATCAACT TCGGCAAGGA GATCGTTTCG
AACATCTATC ACCCGGTGGA TGTGCCCAAG CAATACATCG CTGCGCCGAA GGTGAGCCGG
GTGTCTGAGT CCGAGCTGAC CGGCGTTGCC CTGACAGACA CCTTGTCGGT ACTCGACGAC
CGCGTGCAAT TGACGCTGGG GGTGCGCCGG CAGGAAATCG AGTCGCGCAA CTACACAGCG
GGGGTGTTCA CCACGCGCTA CAACGACAGT GCAATTACCC CCGTCGTAGG CGTGGTGGTC
AAGCCGTGGG AAAACGTCGC GCTGTACTAC AACTATGTCG AAGGCTTGAG CAAAGGCGAT
ATCGCACCGG ACACGGCAAC CAATGGCGGT GATGCCTTTG CACCCTACAA GACCAAACAG
CACGAGCTGG GTGTGAAGTA CGAACACAAC ACGTTCATGA CCACAGTTTC GGTGTTCCAG
ATAGAAAAAC CTAGCGGTGA GCTTGGCGCC GACCGCCGCT TCTCGGTCGA GGCCCAGCAA
CGTAACCGCG GTATCGAGCT GAGCATGTTC GGTGAGGTTG CACCGGGCAC CCGGTTGCTG
GGCGGCGTGA CGGTGCTGGA CGGCAAGCTG ACGGATTCGG CAACCCCCGC CAACAAGGGT
AACGAAGCGG TCGGCGTGCC GGACGTGCAG GCCAACCTGT GGGCGGAGTG GGATACACCT
TGGGCTGAGG GCGTGACGCT GACCGGTGGT GCTATCTATA CCGACAGCCA GTACATCGAC
CAGGCCAATA CCCAGGCACT CGATGCCTGG ACACGGTTCG ACGTTGGGGC GCGCTATGCC
ACCCGGATCG ATGGCCGCCC TACAACATTC CGGGCAACGG TGCAGAACGT GTTCGACCGC
GAGTATTGGT CGGGCGTAGC TTCGTACGGC GCGATATCGC CGGGTTACCC GAGGGCGTTG
CAGTTGTCGG CCACGGTAGA CTTCTGA
|
|---|
| Protein sequence | MPVASRPFRK RALAVAVRGS LFGAVLVAGV GQLLPAVAQP LDAVAIRTYQ IAPGPLGRVL
SSFALACGVA LSFEPALTDG LHSPGLSGAY SARDGIAQLL AGSGLELVEL SNGSYQLIRQ
PSSGDSLTLA ATTIEANGIR HETLPEAYAG GQVARGGRLG MLGNKDVMDT PFSVTSYTAK
TLADLQTVTV ADALERDPSV RSTGQTGGIV DSFFIRGFPV GEGNLGELAF DGVYGVAPNY
RVFTEYAERV EVLKGPGALM YGISPNSGVG GVINIVPKRA LAEDLTRVTA SYSSDTQVGG
HLDISRRFGD QRQWGVRFNG SLAQGDTAID DQQRALDIGA IALDYQGERL RLNLDFISQK
ERWDAASRPF TVAPGFGVPS AASGRTNLPQ DWGWSNTREQ SALLGGEYDI SDSLTVFAHA
GGGRADVARM SDQVPKILNA AGDTSNTPGY YKFNVDRSTA DVGLRALFET GAVNHTVTAM
ATRYQDELSR GINFGKEIVS NIYHPVDVPK QYIAAPKVSR VSESELTGVA LTDTLSVLDD
RVQLTLGVRR QEIESRNYTA GVFTTRYNDS AITPVVGVVV KPWENVALYY NYVEGLSKGD
IAPDTATNGG DAFAPYKTKQ HELGVKYEHN TFMTTVSVFQ IEKPSGELGA DRRFSVEAQQ
RNRGIELSMF GEVAPGTRLL GGVTVLDGKL TDSATPANKG NEAVGVPDVQ ANLWAEWDTP
WAEGVTLTGG AIYTDSQYID QANTQALDAW TRFDVGARYA TRIDGRPTTF RATVQNVFDR
EYWSGVASYG AISPGYPRAL QLSATVDF
|
|---|
| |