Gene PputGB1_3356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3356 
Symbol 
ID5871141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3788196 
End bp3789524 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content64% 
IMG OID641548472 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_001669584 
Protein GI167034353 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.431157 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.886803 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCC CATGCCTGCT GTTGTGCCTG TTGGGGGTGG CCGTTCAGGC CAGTGCCATG 
GACCTGAAGG AAGCCTGGGA CCTGTTGCAA TACCAGGGCC CGATCTACCG CGCCGCGGTG
CATGAGAAAC AAGCCGGCGG CGAGAACCGC GCCATCGGTG AGGCGGGCCT GCTGCCGCAG
ATCAACGCAG CGGCCTACTT CAACAGGGTC AATGGCAGCC AGCGCCAGAA TGGCCAGGAC
AACGACCTGG ACTACGACTC CAAAGGCGCC AACGTGCGCC TGCGCCAGCC GCTGTTCAAC
AAGCAGAAGA TGGCCGAGTA CCGCCAGGGT CAGCAACGGG CCGACTATAG CGTGGCGGTG
TTCGATGCCA AGAGCCAGGA CGCCGCCGTG CGCCTGGCCG ACGCCTACTT CGATGTGCTG
CTGGCCAGCG AAACCATCAC CCTGGCCAAG GCCAAGTTGA ACGCCTTCGA AGAGCAACTG
GCCTCGGCAA AGCGGCGCAA GGAGCTGGGG GCCGGCACCA TCACCGATGT CGACGAATCG
GTGGCCCGCC GTGACCTCGC CGAAGCCGAC CTGATCGAGG CCCAGGACAA CCTGATCAAC
GCCCGGCGCA AGCTGGAGGA ATACATTGGC GAAACCCCGC AGTCGCTGAC CACTTTGCAG
CCAGGCTTCG CCACCCCGCC GCTGATGCCG GGCAACCTGC AGGACTGGCT GGTGAAAGCC
CAGGCCGACA GCCCGCTGAT TCATGCGCGC CGGCACAACT ACGAGCTGGC CGAAGAAGAA
GTCAACCGCG CCCGCGCCGG GCACTACCCT ACCCTGGATT TCGTGGCAGG CTATACCGCT
GGCAGCAGCC AGTCGATATC CGAGTTGAAC CAGCGCAACC ACTACAGCTC GATCGGGCTG
GAGCTGAACA TTCCGCTGTA CAGCGGCGGC AGTACGAGCG CCCTGACCCG TCAGGCCAGC
GCCAACAGTT CCAAAGCCCT GGACGAACTC GACGCAACGC GCCAGGAGGT GATTTCCGAC
ACCACCCGCG AGTACCGTGG CGTGCAGAGT GGCGCCTTGC GCGTTCATGC GCTGGAAAAG
GCCGTGGCCT CCAACGAACG CTCGCTGACT TCGACCCGCA AGGGCTTCAA GGAAGGCGGC
ACCAGCACCA ATTCGGACGT GCTCAACGCC GAGGAACTGC TGTATGACGC CCGCCATGAT
CTGTTCGAGG CCAAGTTGAA CTACCTGATG TCACGGTTGC GCCTGGCCTC CTCGGTGGGC
AGCCTCGGGG ATGACGATAT CGAACAGGTC AACAGCTACC TGGGGCCGGA ACTCATGGTG
AGCAACTGA
 
Protein sequence
MKRPCLLLCL LGVAVQASAM DLKEAWDLLQ YQGPIYRAAV HEKQAGGENR AIGEAGLLPQ 
INAAAYFNRV NGSQRQNGQD NDLDYDSKGA NVRLRQPLFN KQKMAEYRQG QQRADYSVAV
FDAKSQDAAV RLADAYFDVL LASETITLAK AKLNAFEEQL ASAKRRKELG AGTITDVDES
VARRDLAEAD LIEAQDNLIN ARRKLEEYIG ETPQSLTTLQ PGFATPPLMP GNLQDWLVKA
QADSPLIHAR RHNYELAEEE VNRARAGHYP TLDFVAGYTA GSSQSISELN QRNHYSSIGL
ELNIPLYSGG STSALTRQAS ANSSKALDEL DATRQEVISD TTREYRGVQS GALRVHALEK
AVASNERSLT STRKGFKEGG TSTNSDVLNA EELLYDARHD LFEAKLNYLM SRLRLASSVG
SLGDDDIEQV NSYLGPELMV SN