Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3356 |
Symbol | |
ID | 5871141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3788196 |
End bp | 3789524 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548472 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001669584 |
Protein GI | 167034353 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.431157 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.886803 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACGCC CATGCCTGCT GTTGTGCCTG TTGGGGGTGG CCGTTCAGGC CAGTGCCATG GACCTGAAGG AAGCCTGGGA CCTGTTGCAA TACCAGGGCC CGATCTACCG CGCCGCGGTG CATGAGAAAC AAGCCGGCGG CGAGAACCGC GCCATCGGTG AGGCGGGCCT GCTGCCGCAG ATCAACGCAG CGGCCTACTT CAACAGGGTC AATGGCAGCC AGCGCCAGAA TGGCCAGGAC AACGACCTGG ACTACGACTC CAAAGGCGCC AACGTGCGCC TGCGCCAGCC GCTGTTCAAC AAGCAGAAGA TGGCCGAGTA CCGCCAGGGT CAGCAACGGG CCGACTATAG CGTGGCGGTG TTCGATGCCA AGAGCCAGGA CGCCGCCGTG CGCCTGGCCG ACGCCTACTT CGATGTGCTG CTGGCCAGCG AAACCATCAC CCTGGCCAAG GCCAAGTTGA ACGCCTTCGA AGAGCAACTG GCCTCGGCAA AGCGGCGCAA GGAGCTGGGG GCCGGCACCA TCACCGATGT CGACGAATCG GTGGCCCGCC GTGACCTCGC CGAAGCCGAC CTGATCGAGG CCCAGGACAA CCTGATCAAC GCCCGGCGCA AGCTGGAGGA ATACATTGGC GAAACCCCGC AGTCGCTGAC CACTTTGCAG CCAGGCTTCG CCACCCCGCC GCTGATGCCG GGCAACCTGC AGGACTGGCT GGTGAAAGCC CAGGCCGACA GCCCGCTGAT TCATGCGCGC CGGCACAACT ACGAGCTGGC CGAAGAAGAA GTCAACCGCG CCCGCGCCGG GCACTACCCT ACCCTGGATT TCGTGGCAGG CTATACCGCT GGCAGCAGCC AGTCGATATC CGAGTTGAAC CAGCGCAACC ACTACAGCTC GATCGGGCTG GAGCTGAACA TTCCGCTGTA CAGCGGCGGC AGTACGAGCG CCCTGACCCG TCAGGCCAGC GCCAACAGTT CCAAAGCCCT GGACGAACTC GACGCAACGC GCCAGGAGGT GATTTCCGAC ACCACCCGCG AGTACCGTGG CGTGCAGAGT GGCGCCTTGC GCGTTCATGC GCTGGAAAAG GCCGTGGCCT CCAACGAACG CTCGCTGACT TCGACCCGCA AGGGCTTCAA GGAAGGCGGC ACCAGCACCA ATTCGGACGT GCTCAACGCC GAGGAACTGC TGTATGACGC CCGCCATGAT CTGTTCGAGG CCAAGTTGAA CTACCTGATG TCACGGTTGC GCCTGGCCTC CTCGGTGGGC AGCCTCGGGG ATGACGATAT CGAACAGGTC AACAGCTACC TGGGGCCGGA ACTCATGGTG AGCAACTGA
|
Protein sequence | MKRPCLLLCL LGVAVQASAM DLKEAWDLLQ YQGPIYRAAV HEKQAGGENR AIGEAGLLPQ INAAAYFNRV NGSQRQNGQD NDLDYDSKGA NVRLRQPLFN KQKMAEYRQG QQRADYSVAV FDAKSQDAAV RLADAYFDVL LASETITLAK AKLNAFEEQL ASAKRRKELG AGTITDVDES VARRDLAEAD LIEAQDNLIN ARRKLEEYIG ETPQSLTTLQ PGFATPPLMP GNLQDWLVKA QADSPLIHAR RHNYELAEEE VNRARAGHYP TLDFVAGYTA GSSQSISELN QRNHYSSIGL ELNIPLYSGG STSALTRQAS ANSSKALDEL DATRQEVISD TTREYRGVQS GALRVHALEK AVASNERSLT STRKGFKEGG TSTNSDVLNA EELLYDARHD LFEAKLNYLM SRLRLASSVG SLGDDDIEQV NSYLGPELMV SN
|
| |