| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3322 |
|---|
| Symbol | |
|---|
| ID | 5871107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3730234 |
|---|
| End bp | 3732720 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548438 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001669550 |
|---|
| Protein GI | 167034319 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCTG TCAACGAATG CAACCGTACT CTCCCGATCA ACCCGACCAA AGCCAGCCTG
GCGCGGGCCG TGCATCGCGC GCTGTTCAGC GTGGCGTTGG CGACCCCGCT GGCAACGGCG
ATGATCGCTC AACCTGCCGT TGCCCAGACC CAGGCTGAAA TGCGCTTCGA CATACCCGCT
GGCGCGCTTG GCACGGCACT CACGCAATTT GCCTCGGCCG CCGCTGTGAC GCTGTCGTTC
GAGCCGTCAT CGGTGCAGGC GCTGCATTCG CCTGGGCTGC ACGGCCGTTA CAGCGCCGAT
GCGGGCCTGC GCCAGTTGCT GGCCGGCAGC CGATTGCAGG TGCTGAAGCA GGGCAGTGGC
AGCTACTCGC TGCTGCCCAT GGTGGGTGAT GATTCCACCT TGCAGCTCGA TACCACCAGC
GTTACCGGCA CGGCCGTTGA GTCCGCCTAT GGGCCGGTAA GCGGCTACGT CGCCAGCCGC
AGCGCGACCG GCACCAAGAC CGACACGCCG ATTCTGGAAA TCCCCCAGGC CATCAACGTG
ATCACCGCCG ACCAGGTGCA GGCGCAAGGG GCGCGCAACC TGACCCAGGC GCTGCGCTAT
ACCCCGGGCC TGGCCACCGG CGGCTTCACC GACCGCAACA GCATTGCCGA CGAAATCACC
AGCCGTGGCT TTGCCCCGAC CCCGTTGTAT CTGGACGGCG CCTACTTGCC GTACGCCGGC
AGCCTGGGCG GCGCCCCCCA GATCGACCCC TACACGCTGG AGCGTATCGA GGTGCTCAAA
GGCCCATCGT CGGTGCTGTA CGGGCAAAAC CAGCCGGGCG GGCTGATCAA CATGGTCTCC
AAGCGCCCGA CCCGCGAGCA ACGTAGCCAG GTAAAGCTGG GCGCCGGTAG CTACAACCGG
GTCAACGGTG CCTTCGATAC CAGCGGCCCG CTGGACGAGC AGAAGGTCTT CACCTATCGC
CTGGTCGGCG TTGCCGACAA AGGCAACGAA ATGGTCGCCC ATGCCCACAG CGAGCGCTTG
CTGCTGGCAC CCAGCTTGAC CTGGGCGCCG AATGAAGACA CCTCGCTGAC GTTGCTCGCT
CAGGTTCAGC GTGACGATGG CCTGCCCGAC TACCAGACGC TGCCGATGAT CGGTTCGCTC
AAGCGTGGCC CGACAGGCCA GCATATCGAC CGGGACTTCT TCTCGGGCGA CTCGCATTAC
AACGATTACA AACGCAACCA GTACATTTTC GGCTACGACT TCAACCACCG TTTCAGTGAC
GAGCTGGCAT TTCGCTCTAC CGCGCGCTAC ACCGATGTCC GTGACCGCTA CAAAGGCTTT
TACCTGCGCA GTTTCGTGAC AGAGGGCGAT GGGGTGGACT ACACCCGCGC CAACCGGGTG
AAGCTCGACT GGCGCCAGCA CAATATTTCG TACACCGTCG ATAACAACCT GGAATACAAG
TTCAATACAG GGGCCTTGCA GCACACCGCG CTGGCAGGCG TGGACTACCG TCACTTCACG
CGCAAGTACG ATGGCTATAA CGCCTACAAC GTGCTGCCCG TCGATCTCTA TGGCAAGAAC
AACTTCGACA CCAGCAGCAT CACCCCGGTA CTGGATACCC GTTGGGACAA TACCGTGCGC
CAGACCGGGG TTTACCTGCA GGACCAGATC AAGCTGGACA ACTGGATCCT GACCGTAGGC
GGGCGCCAGG ACTGGGCCGA AATCGACAAC AAAGACTTGT TGGCGCACAG CATTGCTTCC
CAGCGTGACA GCAAGTTCAC CGGGCGCATC GGCCTCACCT ATGTCACCGA GTTTGGCCTG
GCACCCTATG TCAGCTATTC CCAGTCGTTC TTGCCAACCT TGGGCACGGC GGCCCCAGAG
CGTGGCGGCA AGGCGTTCGA GCCCACTGAG GGCGAGCAAT ACGAAGTGGG GCTGAAGTAT
CAGCCGTTCG AGGGCACCTT GTTCACGGCC TCGGTGTTTC AGGTGAAGCA GAAAAACGTG
CTGACCGGCG ATACCGAGTA CCCGCAGTAC GAGTCGCAAA ATGGCGAGGT GCGTTCGCGT
GGGGTGGAGC TGGAGCTCAA ATCCAGCATC GAGAACGTTG ATGTCCTGGC CGCTGCCACC
TACATCGACT CGTTCTATAC CAAGAGTACC TATGGCGACC AGGGCAACCG CAACGAGTCG
CAGGCCCCGG TGTCTGCCTC GCTGTGGGTG GACTATCACT TCACCCAGGC CATGCTCAAT
GGCCTGACCT TTGGCGCCGG TGCCCGTTAC ACCGGCCGCA AGCCGGGCAA CTCGGCCAAT
ACCTTCGATG TGCCGGCTTA TGCCGTGTAT GACGCTACCG TCAGCTACGA CCTGGGCAAA
CTCGACCCAA GCCTGCGTGG CCTGCAGGCC AGCGTGAATG TGCAGAACAT CTTCGACCGC
GAGTACGTAT CGGACTGCAA CTACGCATTT GGCTGCTACT ACGGGCAGGA GCGGGTAGCT
TCGGTAGAGA TGACCTACGA CTGGTGA
|
|---|
| Protein sequence | MLAVNECNRT LPINPTKASL ARAVHRALFS VALATPLATA MIAQPAVAQT QAEMRFDIPA
GALGTALTQF ASAAAVTLSF EPSSVQALHS PGLHGRYSAD AGLRQLLAGS RLQVLKQGSG
SYSLLPMVGD DSTLQLDTTS VTGTAVESAY GPVSGYVASR SATGTKTDTP ILEIPQAINV
ITADQVQAQG ARNLTQALRY TPGLATGGFT DRNSIADEIT SRGFAPTPLY LDGAYLPYAG
SLGGAPQIDP YTLERIEVLK GPSSVLYGQN QPGGLINMVS KRPTREQRSQ VKLGAGSYNR
VNGAFDTSGP LDEQKVFTYR LVGVADKGNE MVAHAHSERL LLAPSLTWAP NEDTSLTLLA
QVQRDDGLPD YQTLPMIGSL KRGPTGQHID RDFFSGDSHY NDYKRNQYIF GYDFNHRFSD
ELAFRSTARY TDVRDRYKGF YLRSFVTEGD GVDYTRANRV KLDWRQHNIS YTVDNNLEYK
FNTGALQHTA LAGVDYRHFT RKYDGYNAYN VLPVDLYGKN NFDTSSITPV LDTRWDNTVR
QTGVYLQDQI KLDNWILTVG GRQDWAEIDN KDLLAHSIAS QRDSKFTGRI GLTYVTEFGL
APYVSYSQSF LPTLGTAAPE RGGKAFEPTE GEQYEVGLKY QPFEGTLFTA SVFQVKQKNV
LTGDTEYPQY ESQNGEVRSR GVELELKSSI ENVDVLAAAT YIDSFYTKST YGDQGNRNES
QAPVSASLWV DYHFTQAMLN GLTFGAGARY TGRKPGNSAN TFDVPAYAVY DATVSYDLGK
LDPSLRGLQA SVNVQNIFDR EYVSDCNYAF GCYYGQERVA SVEMTYDW
|
|---|
| |