| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3234 |
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| Symbol | |
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| ID | 5871019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3622062 |
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| End bp | 3624230 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641548350 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001669462 |
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| Protein GI | 167034231 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCC GATCTAGTTT GCGATACAGC TTCCAGCCCC AGGTGGGAAA CGCTGAATTC
GAAGTGGTGT CGTTCAAGCT CAAGGAGGAG CTCAGCCAAC CGTTCACATT AACCCTGGAG
CTGATCAGCT TTGAGCACGA TGTCGACTTT GGCCACTTGC TCGACAAACC AGCGCTGTTC
ACCATCTGGG ACGGTGCCCA CCCCGTACGT TACGTACACG GCCTAATCAG CAGCTTCAGC
CAGGGCGAGA GTGGTTTCTC CCGCACTTAC TACCATGCCT TGGTCGAACC CCAATTGGCC
CGTGCCAGGC TTCGCTCGAA CTGGCGCATC TTCCAGCACA AGACCGTTCC GCAAATTCTC
GAGCTCATGC TCAAGCGCCA AGGCATCGTC CAGTTCGACA TGCGCACTAG CATGGACCAT
CAGGTACGCG AGTTCTGCGT ACAGGCCGGC GAGACCGACC TCGACTTCAT CGCCCGCCTG
GCAGCAGAGG AAGGCATCGT CTACCGCTTC GAGCACAACG ATGAACGCCA TGGATTGATC
ATCACCGACA GGCTGCAATC ACTTGGCCTG ATCAGTCATG GTGCCATCAA GCGCGAGGAC
AACGACGAAG GCTTCGACGA AGACGACGCG CCCTTGGCCC CCGACACCGT GCTGTACCTT
TCCAGCAGCG GCGGTGACCA GCCTAAATCC TGCCTGCGGC GCCTGCGCTA CAGCGAACAG
GTACGTACCG CACGACAAGT CCAGCGCGAC TACACCTTCA CCCACCCGGC CTATCGCCAG
GAGCACAGGG CGTCCGGCCG TTACCTGGAG CATCAGTCCA AGGATTACGA GTGCTTCGAC
TACCCGGGCC GTTACAAACG CGACGCCGTT GGTAAACCGT TCACCGAAAA TCGCATCACT
GCCTTACGAC ACGATGCGCG CGTTGCCGAG GTCGAGGGTG ACGATGTACG CCTGCAACCG
GGTCTGAGCT TCAACCTGAC CGGTCACCCA CGGGAAAACC TGAATGTGCA TTGGCGGGTA
AGCGCGGTCA GCCACGAAGG CAGCCAGTTC ACCAGCCTGC AGGAAGAGGC GTTCGGCGCT
GAGCAAAGCA CACGTTACGA ACAAAAAGCT GTGCTGGTTC CGGGCCGAAT CGAGTGGCGC
CCTGCGCCCT TGTCCAAGCC ACGGGTTGAC GGCCCGCACA TGGCAACCGT GGTTGGACCA
CAGGGCGAGG AGATCTACTG CGACCAATGG GGCCGAGTCA AAGTCAGCTT CCCCTGGGAC
CGTGAAAGTG AAAACAATGA ATTCAGCTCC TGTTGGGTGC GCGTGTCGCA GGGCTGGGCC
GGTGGGAGTT GGGGCGCCAT GGCCATCCCG CGCATAGGCC AGGACGTGAT CATCCACTAC
GTCAACGGTG ACCCCGATCA GCCGATGATC ACCGGCCGCA CCTACTGCGG TAACCAACTG
CCTCCGTATG ATCTGCCTCA GCACAAGACC CGTATGACCA TCAAGAGCCA GACCCACAAG
GGCGATGGCT TCAATGAGCT GCGCTTCGAG GATGAACTGG GCCAGGAGGA AGTGTTCATC
CATGCCCAGA AAGACCACAA CATCGTGGTC AAGCATGACG AAAGTACCCA GGTCGGCAAT
GACCGCACGG AACAGGTCAA TAACGACGAG TCGATTTTGA TTGGCCATGA CCGTACTGAA
ACGGTTGGCA ATGACGAACA CGTCACCATT GGCCAAGACG CCGCGCTCGA TATAGGGCGC
AACCAAACCA TCAAGATAGC CAAGGACCGT GTTGAAACCA TCGGCAATCA CCGCCACGAC
CACATCGCCG CCAATCACCA CATCACTATT GGAGGCAACC TCAAGCAGCA GATCGAAGGG
CTCGCCGAGC TGGAAGCCCG AGGAGCAATC CACAGGCGTA CCCGCCGCTA TGAGCTTCGT
ACGGCAGAAG CAGTGATCAT CCAGGGCCCC GGGGGCTCTA TCCAGATCGA TGAGACCGGC
ATCACCCTGA ACAGCCCGAC AATACGCATC AACGGCCAAA TCCTCAAATC GCCCGATGGG
GCAACCAACC CCTTTTCAAT CAGCAGCGCG CCAGTCACTG GCAAACCTCT GGAACGTCAG
TGTGGGCGTC GCCCCGATGG CGTCTGTCCC TTGCCCGACT GCCGTTGCAT CGGGGGGGCA
GGTCGATGA
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| Protein sequence | MPSRSSLRYS FQPQVGNAEF EVVSFKLKEE LSQPFTLTLE LISFEHDVDF GHLLDKPALF
TIWDGAHPVR YVHGLISSFS QGESGFSRTY YHALVEPQLA RARLRSNWRI FQHKTVPQIL
ELMLKRQGIV QFDMRTSMDH QVREFCVQAG ETDLDFIARL AAEEGIVYRF EHNDERHGLI
ITDRLQSLGL ISHGAIKRED NDEGFDEDDA PLAPDTVLYL SSSGGDQPKS CLRRLRYSEQ
VRTARQVQRD YTFTHPAYRQ EHRASGRYLE HQSKDYECFD YPGRYKRDAV GKPFTENRIT
ALRHDARVAE VEGDDVRLQP GLSFNLTGHP RENLNVHWRV SAVSHEGSQF TSLQEEAFGA
EQSTRYEQKA VLVPGRIEWR PAPLSKPRVD GPHMATVVGP QGEEIYCDQW GRVKVSFPWD
RESENNEFSS CWVRVSQGWA GGSWGAMAIP RIGQDVIIHY VNGDPDQPMI TGRTYCGNQL
PPYDLPQHKT RMTIKSQTHK GDGFNELRFE DELGQEEVFI HAQKDHNIVV KHDESTQVGN
DRTEQVNNDE SILIGHDRTE TVGNDEHVTI GQDAALDIGR NQTIKIAKDR VETIGNHRHD
HIAANHHITI GGNLKQQIEG LAELEARGAI HRRTRRYELR TAEAVIIQGP GGSIQIDETG
ITLNSPTIRI NGQILKSPDG ATNPFSISSA PVTGKPLERQ CGRRPDGVCP LPDCRCIGGA
GR
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