| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3221 |
|---|
| Symbol | |
|---|
| ID | 5871006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3606556 |
|---|
| End bp | 3610140 |
|---|
| Gene Length | 3585 bp |
|---|
| Protein Length | 1194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641548337 |
|---|
| Product | type VI secretion protein IcmF |
|---|
| Protein accession | YP_001669449 |
|---|
| Protein GI | 167034218 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.79348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA TATGGAACCC ATTCAAACGC TGGGGGCTGC AGTGGGTAAC GCGCGCGGGC
TTGGCGCTGC CGCTGTTGCT CGGGTTGGGC ACCGCACTGA TGCTGGTCGC CATCTGGTGG
CTCGGACCGC AATGGTCGTG GTATGAACAA AAGCCACTGG CGAGTGTGCT GCATCGCAGC
TTGGCAAGCC TTGTTTTCCT GCTGATGCTA CTTCTAGGCT GTCTTGTAGT ACTGCGCATA
CGCTATCGTC GCCTGCAAGC GGAACGTCGG GAGGTAGTGG CCGCCGAACA AGACCGGGCG
CTACATTTTG TGCAGGCGCA AGAGATGGCG CTGAGCCAAG GGCTTGACCG GTACCTTGAC
AATGCGGGTG GGCGACGTGC GTTGTACCGG CTGCCCTGGT ACCTGGTGTT GGGTGACGAA
CAGTCCGGTA AAACCAGCTT TGTCGACCGC AGCGATCAAC GCTTTACCTT GACGCGCATC
GACCAGGCTC AGGCACGAGG CCGACAGGCT GAAGCATTGG CCTATCCGGT GGGCTGGTGG
GTCAGCGACG ATGCTGTAAT CATTGACCCG CCCGGTATTT TTATCAGCCA GAATCCACCA
GCGGGCTCGG CGGCCACCGA TCCCTCCGCG CCGCCTGGCA CCCAGGCCAG GTTGTGGGAG
CATCTATTGG GTTGGCTGCT GCGCAACAGA AGCCGGCGGG CGCTCAATGG TTTGCTGCTG
GTTGTCGATC TACCGGCACT GCTGCATGGC AAGCCAGAGC AACGCGCCGC CCTGGCCCAT
GGCTTACGCA CACGCCTTTA CGAAGTGAGC AGTCAGCTGG GATCGCGCTT GCCACTATAC
GTGGTGCTGA CCAAATTCGA TCTGCTGGAT GGCTTCGATC AGTTATACAG CAAACTTTCG
GCCGCCAAGC GTGAAAGCCT GTTGGGGTTC ACTTTCAAGT TGGATGCGGT CGATACGTTC
GACGCCTGGC TGGAAGAGTA CGACCAGCAA TACGGTCGGC TGCTCGCCAA GTTGAATGAA
CAGGTCTTTG ATCGGCTGGA TGTGCTGGGC AAGACAGCAC CGCGCGGGCA GCTGTTCTCA
CTGCATGCAC AGCTGATCGG TTTGCGTCCG ATACTGCTGA CCTTTCTGCG TGAAACGTTG
GCGAGTGACC GTTTCACCAC GCCTGCGCTG GTACGAGGTG TGTACTGGTC GTCAGTGGTG
CAGCAAGGCG ACATCCGCAA TGTGTTCGTT CGCGAAGCAG CACAGCCGTA CAAGACTAAA
CTTCCGCTGC TTGAAGGCAA GGCTCAGGGC AAGGCGTTGG CTTATTTCAT CCAGCAAGCC
TTCAGGCGAG TTATCTATCA AGAGGCCGGT CTGGCAGGCG ACAACATCCG GGTGACGCGC
AGCAAGCGGC AGTTGCTGTG GGTTGGCTCG GGTGTAGGCA TCCTGGCGTT CAGTGTCGCC
ATCGGCAGCT GGCAACGCTA CTTCGATATC AATAGTTCCA AGGCTACCAG CGTGCTTGCC
AAGAGCCAGG AATACAGCCA GCGCGAAGTG GATCAGCGTC TTGATCCGAC CGGGCGCAAC
TTGTTGGAGC CTCTGGATCG GATCCGCGAT GCGGTGGCGG TATTCGGTGA CTATCGCACG
GCGTGGCCGG GTGTTGCCGA CTTTGGCCTG TATGAGGGGC GCAACATCGG TCCTCTGGTT
GACGAGGCGT ACCTGAGCTT GCTGTCCAAG CGCTTTTTGC CTGCATTGGC CGGCGGCGTG
ATTGACGTCA TGAACGCAGC AACACCGGGT AGCGAACGAC AAATGGCTGC GCTTAGGGTT
TACCGTATGA TCGAAGAGCG CCATAGCCGC AGGCCTGAAT GGGTCGAAGA CTGGATGGCA
CGTCAGTGGC AACAGGCTTT CCCTGGCCAA GGGCAGTTGC AGCGTGACCT CATGCAGCAT
CTGAAGTACG CCTTGGCTTA TGCCGATGCC GATTTGCCGC AATACCGGCA GCGCGTCAAC
GAAGTACAGC AGGCGTTGCG TGAGCTACCT CTGCCACTGC GGGTTTACAC GGGACTGAAG
CAACAGGCGC ACGAGCAACT GCACACCAGC CTGGACCTGC GTCACCAGGT GGGCCCCGCA
TTCGACGTTG TTTACCAGAC ATCTTCCGGT GCCCAGGGGG AGGATGTAAC GCTGGCCCCT
ATGCTGACTG CCAAAGGTTT CAGAGAGTAC TTTGCGCCGC GCAGCGAGCG ATTCGCTGAG
ATGGCGATGG TCGATCAGTG GGCATTGGGG GAGCGCAGCC AACTCGACTA TTCGGACATT
GACAGGCATG CGCTTACCGA AAGGTTGCAC AACCTCTACA GCGCCGATTA CATCGACAGT
TGGCGTCGCG CCTTGAATGC ATTCACCGTG GCTGACTTCC GTGATCTGGA TCATGGTGTC
ACGATTCTGG AGCAATTGAC CGGCCCCGCA GCCCCTTTGC AGCGGCTGCT GGAAACAGTC
AGAGATAACA CTTCGCTTGC TTCACCTGCG GTGGTTGAAA CACCGAGCGA AGTGACCAAG
CTGCGACCAC CAACAGCCAA GCCTGATCAA CAGCAAACCT TGGCCATTCC GCGGGCGTTT
GCAGGGTTGG GCGCCATGTT GCAGGCAACA GGAGAAAAAC CGACCTACTA CGATGAAACC
CTTGGTGCGA TAGCGGCCGT GCTGAACTAC GCCAAGGCCG TTCAGGACAG CCCGGATCGT
GGCAAGGCCG CACTGCAAGC CGTGCATCAA CGCTTTTCGA TGACAGGGCA GGACCCGATC
GGCACCCTGC AACGTATTGC CACAGGCTTG CCGGAGCCAA TCAACCACCA GGTTAGAAAG
CTTGCCGATC AGACTGCCCA AGTGCTGAAT GTTGAAGCAT TGCGCGAACT GGAGCGACGC
TGGGATGCTG AAGTGTACAG TTTCTTCCAG CAACGCCTGG CAAACCGCTA CCCCTTTGTG
GTGAGGGCGC CCGATGCTGC GCTGGATGAC TTCGAGGCGT TCTTCGGGCC GAAGGGGCGC
CTGCAGCAGT TTAATGAACG CTATCTCAAG GTCTTCCTGA AGGAAAACCT CGAGGCCTTG
TATTCTAGCC AGTACGGGCA ATCCTTGATC CGTGAGGATG TGATCGAGCA GCTCGAGTTG
GCGGATCGCA TTCGTGAAAC GTTCTTCGAT CAGCGTGGAA AGCTGAGTGT GCAATTCAGC
ATCGAGCCGT TGGGTCTCAG CGCGAACCAA CGTACCAGCC TGCTGGACCT GGATGGCCAG
TTGATCTCCT ATACCCATGG GCCACGCCAG ATCACCGGTA TCGTCTGGCC AAATACCTTG
GGGCAGCAGG TGCGCAGCAA CCTGACCCTG CTCAGGCAGA GCGGCAATAG CAGCAGCCTT
GAGTACCGTG GCCCATGGTC GATGTTCCGT TTGCTCAGCC GCGGTTCGCT GAATGGGCGC
ACGGCAACCA GCGTGGACCT GAGCTTCAGG ACGGGTGACG GTGTGATGCG CTATCGGTTG
AATGCTGAAA AGGCCTTCAA TCCCATTACC CAGCAGCCGT TCAAGGGCTT CCGTTTACCG
CGAGGGTTGT TGCAACAGCC ACTCAAGGTT GCTCAGATGG AGTAA
|
|---|
| Protein sequence | MNQIWNPFKR WGLQWVTRAG LALPLLLGLG TALMLVAIWW LGPQWSWYEQ KPLASVLHRS
LASLVFLLML LLGCLVVLRI RYRRLQAERR EVVAAEQDRA LHFVQAQEMA LSQGLDRYLD
NAGGRRALYR LPWYLVLGDE QSGKTSFVDR SDQRFTLTRI DQAQARGRQA EALAYPVGWW
VSDDAVIIDP PGIFISQNPP AGSAATDPSA PPGTQARLWE HLLGWLLRNR SRRALNGLLL
VVDLPALLHG KPEQRAALAH GLRTRLYEVS SQLGSRLPLY VVLTKFDLLD GFDQLYSKLS
AAKRESLLGF TFKLDAVDTF DAWLEEYDQQ YGRLLAKLNE QVFDRLDVLG KTAPRGQLFS
LHAQLIGLRP ILLTFLRETL ASDRFTTPAL VRGVYWSSVV QQGDIRNVFV REAAQPYKTK
LPLLEGKAQG KALAYFIQQA FRRVIYQEAG LAGDNIRVTR SKRQLLWVGS GVGILAFSVA
IGSWQRYFDI NSSKATSVLA KSQEYSQREV DQRLDPTGRN LLEPLDRIRD AVAVFGDYRT
AWPGVADFGL YEGRNIGPLV DEAYLSLLSK RFLPALAGGV IDVMNAATPG SERQMAALRV
YRMIEERHSR RPEWVEDWMA RQWQQAFPGQ GQLQRDLMQH LKYALAYADA DLPQYRQRVN
EVQQALRELP LPLRVYTGLK QQAHEQLHTS LDLRHQVGPA FDVVYQTSSG AQGEDVTLAP
MLTAKGFREY FAPRSERFAE MAMVDQWALG ERSQLDYSDI DRHALTERLH NLYSADYIDS
WRRALNAFTV ADFRDLDHGV TILEQLTGPA APLQRLLETV RDNTSLASPA VVETPSEVTK
LRPPTAKPDQ QQTLAIPRAF AGLGAMLQAT GEKPTYYDET LGAIAAVLNY AKAVQDSPDR
GKAALQAVHQ RFSMTGQDPI GTLQRIATGL PEPINHQVRK LADQTAQVLN VEALRELERR
WDAEVYSFFQ QRLANRYPFV VRAPDAALDD FEAFFGPKGR LQQFNERYLK VFLKENLEAL
YSSQYGQSLI REDVIEQLEL ADRIRETFFD QRGKLSVQFS IEPLGLSANQ RTSLLDLDGQ
LISYTHGPRQ ITGIVWPNTL GQQVRSNLTL LRQSGNSSSL EYRGPWSMFR LLSRGSLNGR
TATSVDLSFR TGDGVMRYRL NAEKAFNPIT QQPFKGFRLP RGLLQQPLKV AQME
|
|---|
| |