Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3212 |
Symbol | |
ID | 5870997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3596629 |
End bp | 3597873 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641548328 |
Product | outer membrane porin |
Protein accession | YP_001669440 |
Protein GI | 167034209 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.341701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCA ACCCACTCGG TGTCACCGCC CTTTTGCTGG CATCCGCCAG CCCCTTGTTG CAGGCCAGCG AGCAATCCGA ATCGGCAGGC TTCATCGAAG GCAGCAAGCT GTCGATCAAG GCACGCAACA TGTACATGCA GCGTGATAAC CGCGCCAGCG GCGCCCGGCA GAACTACGGC GAGGAATGGG CCCAGGGTTT CATCGGCACC TTTCAGTCCG GCTTCACTCA AGGCACGCTG GGTTTCGGTA TCGACCTGAT CGGCCAGTAC GCCTTCAAGC TCGACACCGG CGATGGCCGC ACCGGTGGCG GCACTGGTCT GCTAGAGCAA GACAGCCACG GCGCCAAGCA GGACATCGGC AAGGCCGGTG CGGCGCTGAA AGTGCGTGCG TCCAACACCG TACTCAAATA CGGCACACAA GTGATGGCGG TGCCGGTGCT GGCCACCTCC GACAGCCGCC TGCTGCCAGA GACCGTCGAC GGTTTCTCGC TCACCAGCAA GGAAATCCGC AACCTGCAGT TGGATGCGGG CCACTTCACC GGCCTGACCA ACCGCAACCA GTCGTCCCGC GACAGCGGGC GCATGACCGC AGTCGACTAC ATTGGTGGGG TCTACAGCTT CAATGAGCGG CTTTCCAGCA GCCTGTACTA CGCCAAGACT GCCGAGCACT TTCGTAAGTA CTACGTGAAC ACCCGCTACC TGTTGCCGCT GGGCGCCAGC CAGTCACTGA AGCTGGATTT CAACGCCTAC GACACGCAAA GCATCGGTCA GGCCCGCAGT GGCGACCTGG ACAACCGCAT CTGGAGCCTG GGCGGCACCT GGACGCTGGG CGCGCATGCC TTCACCCTCG CCTACCAGAA GGTGTCCGGC ACCGGCGACT ACGTGTACGG GCCGGATGGC AACGCGGTGT ACAACTTCGC CAACTCGGTG CAGTACTCGG ACTTCGACTA CGAGAACGAG AAATCCTGGC AGGCCCGCTA TGACCTTAAC CTGGCCGCTT ACGGGGCACC GGGGCTGAGC TTCATGACCC GCTACGTGAA AGGCACCGAC TTCAAGAACG GCAGTGGCGG CGACCTGGAT GGCAAGGCCT GGGAACGCGA TGTCGAGTTG CGTTACGTGG TACAGGCTGG CGTGGCCAAG GATCTGTCGT TTCGCGTGCG CCAGGCCAGC TACCGCAGCT CGGACCGCGG CGGGCAGATC GATGAAGTAC GGGTAATCAC CGAGTATCCG CTCAACCTGT TCTGA
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Protein sequence | MSINPLGVTA LLLASASPLL QASEQSESAG FIEGSKLSIK ARNMYMQRDN RASGARQNYG EEWAQGFIGT FQSGFTQGTL GFGIDLIGQY AFKLDTGDGR TGGGTGLLEQ DSHGAKQDIG KAGAALKVRA SNTVLKYGTQ VMAVPVLATS DSRLLPETVD GFSLTSKEIR NLQLDAGHFT GLTNRNQSSR DSGRMTAVDY IGGVYSFNER LSSSLYYAKT AEHFRKYYVN TRYLLPLGAS QSLKLDFNAY DTQSIGQARS GDLDNRIWSL GGTWTLGAHA FTLAYQKVSG TGDYVYGPDG NAVYNFANSV QYSDFDYENE KSWQARYDLN LAAYGAPGLS FMTRYVKGTD FKNGSGGDLD GKAWERDVEL RYVVQAGVAK DLSFRVRQAS YRSSDRGGQI DEVRVITEYP LNLF
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