| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3124 |
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| Symbol | |
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| ID | 5870909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3498907 |
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| End bp | 3500694 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641548240 |
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| Product | methanol/ethanol family PQQ-dependent dehydrogenase |
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| Protein accession | YP_001669352 |
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| Protein GI | 167034121 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0497789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.831174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGAT CCCCACGTCG CCCCTTGTTC GCCGTGAGCC TGGTGCTCAG CGCCATGCTG
CTTGCCGGCG CGGCTCACGC CGCTGTCAGC AATGAAGAAA TCCTCCAGGA CCCGAAGAAC
CCGCAGCAGA TCGTGACCAA CGGCCTGGGC GTGCAGGGCC AGCGCTACAG CCCGCTGGAC
CTGCTCAATG CCAACAACGT CAAGGAACTG CGGCCGGTCT GGGCGTTCTC CTTCGGCGGT
GAGAAGCAGC GCGGCCAGCA GGCCCAGCCG CTGATCAAGG ACGGGGTGAT GTACCTGACC
GGCTCCTACT CGCGGGTGTT CGCCGTGGAC GCCCGCACCG GCAAGAAGCT GTGGCAATAC
GATGCACGCC TGCCGGATGA CATCCGCCCG TGCTGCGATG TGATCAACCG TGGCGTGGCG
CTGTACGGCG ACCTGGTGTT CTTCGGCACC CTCGACGCCA AGCTGGTGGC CTTGAACAAG
GACACCGGCA AGGTGGTCTG GAGCAAGAAA GTGGCCGACC ACAAGGAAGG CTACTCCATC
AGCGCCGCGC CGATGATCGT CAACGGCAAG CTGATCACCG GCGTTGCCGG TGGTGAGTTC
GGCGTGGTGG GCAAGATCCA GGCGTACAAC CCGGAAAACG GCGAGCTGCT GTGGATGCGC
CCCACCGTGG AAGGGCACAT GGGTTATGTG TACAAGGATG GCAAGGCGAT CGAAAACGGT
ATTTCTGGCG GTGAGGCGGG CAAGACCTGG CCTGGCGACC TGTGGAAGAC CGGCGGTGCG
GCGCCATGGC TGGGCGGGTA CTACGACCCG GAAACCAACC TGATCCTGTT CGGCACTGGC
AACCCTGCGC CGTGGAACTC GCACCTGCGC CCCGGCGACA ACCTGTACTC TTCGTCGCGC
CTGGCGCTGA ACCCGGACGA CGGCACCATC AAATGGCACT TCCAGAGCAC GCCCCATGAT
GGCTGGGACT TCGACGGCGT CAATGAGCTG ATCTCGTTCA ACTACAAGGA CGGCGGCAAG
GAGGTCAAGG CTGCCGCCAC GGCCGACCGC AACGGCTTCT TCTACGTGCT GGACCGCACC
AACGGCAAGT TCATCCGCGG CTTCCCCTTC GTCGACAAGA TCACCTGGGC CACCGGTTTG
GACAAGGATG GCCGGCCTAT CTACAACGAC GCCAGCCGCC CAGGCGCGCC GGGTAGCGAG
GCCAAGGGCA GCTCGGTGTT CGTCGCCCCG GCCTTCCTCG GTGCCAAGAA CTGGATGCCG
ATGGCCTACA ACAAGGACAC CGGGCTGTTC TACGTGCCGT CCAACGAGTG GGGCATGGAC
ATCTGGAACG AAGGCATCGC CTACAAGAAG GGCGCGGCGT TCCTCGGCGC CGGCTTCACC
ATCAAGCCGC TCAACGAAGA CTACATCGGC GTGCTGCGCG CCATCGACCC CATCAGCGGC
AAGGAAGTGT GGCGCCACAA GAACTACGCG CCGCTGTGGG GCGGGGTGCT GACCACCAAG
GGCAACCTGG TGTTCACCGG CACGCCGGAA GGCTTCCTGC AGGCCTTCAA TGCCAAGACT
GGCGACAAGG TCTGGGAGTT CCAGACCGGC TCCGGCGTGC TCGGCTCGCC CGTGACCTGG
GAAATGGACG GCGAACAATA CGTTTCGGTG GTTTCCGGCT GGGGTGGTGC GGTGCCGCTG
TGGGGCGGCG AAGTGGCCAA GCGGGTCAAG GACTTCAACC AGGGCGGCAT GCTCTGGACC
TTCAAACTGC CCAAACAGTT GCAGCAAACG GCAAGCGCTC AGCCATAA
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| Protein sequence | MTRSPRRPLF AVSLVLSAML LAGAAHAAVS NEEILQDPKN PQQIVTNGLG VQGQRYSPLD
LLNANNVKEL RPVWAFSFGG EKQRGQQAQP LIKDGVMYLT GSYSRVFAVD ARTGKKLWQY
DARLPDDIRP CCDVINRGVA LYGDLVFFGT LDAKLVALNK DTGKVVWSKK VADHKEGYSI
SAAPMIVNGK LITGVAGGEF GVVGKIQAYN PENGELLWMR PTVEGHMGYV YKDGKAIENG
ISGGEAGKTW PGDLWKTGGA APWLGGYYDP ETNLILFGTG NPAPWNSHLR PGDNLYSSSR
LALNPDDGTI KWHFQSTPHD GWDFDGVNEL ISFNYKDGGK EVKAAATADR NGFFYVLDRT
NGKFIRGFPF VDKITWATGL DKDGRPIYND ASRPGAPGSE AKGSSVFVAP AFLGAKNWMP
MAYNKDTGLF YVPSNEWGMD IWNEGIAYKK GAAFLGAGFT IKPLNEDYIG VLRAIDPISG
KEVWRHKNYA PLWGGVLTTK GNLVFTGTPE GFLQAFNAKT GDKVWEFQTG SGVLGSPVTW
EMDGEQYVSV VSGWGGAVPL WGGEVAKRVK DFNQGGMLWT FKLPKQLQQT ASAQP
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