Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3118 |
Symbol | |
ID | 5870903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3490164 |
End bp | 3493349 |
Gene Length | 3186 bp |
Protein Length | 1061 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641548234 |
Product | UvrD/REP helicase |
Protein accession | YP_001669346 |
Protein GI | 167034115 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.674969 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACA ACCCGCGCAT CACGTTCATC AGCGCTGGCG CTGGCAGCGG CAAGACCTAT CGGCTCACGG AGCTTTTGTA CCAGGAGCTG ACCAGCCAAC AGGTGCAGCC AGAGGGCATC ATCGCCACCA CGTTCACCCG CAAAGCCGCT GCCGAGCTGC GCGAGCGCGT GCGCAGCCAC CTGCTCGACA AGGGGCAGGT CGGCCTGGCC AGCGCTATGG GCCAGGCACG CATCGGTACG GTAAACAGCC TGTGTGGCCA GTTGCTCGAG CACTTCGCCT TTGAAGCCGG CATGCCACCG CAACAGCGCG TGCTGGAAGA AGAGCAGGCG AAGGTGCTGC TCAACCAGGC CGTCGATAGC GTCCTTGACG GTACGCGCAT GGAGGCGTTC CTTGCCATCA GTCGGCGCCT GGGGCTGGAG GTTACCCTGC AGCAGAGCGA CCTTCCGAGT GATAGCTGGC AAGACGCACT ACGCCGACTG CTGGATCAGC TGCGCAGCAA TGACATTGAC CTTGAGCGCG CGCGCGACTT CGCTGCGCGT AACGCCCAGG ACCTGCTTGC GCACTTCCCC AGCATGACCA GCAGCGATCT GGACGCTGAG CTGCTGCGCA CCCTTCCCGA TGTGCTTGCA CTGCTGCAGG ACGCCAACAG CAAAGTCAAG CTGACAGCAA CGTACATCAC CTTGCTCAAG GACTTCCAGC GTGAGCTGCA GCAAGGCAAT GCCCGCTGGA GCGACTGGGC AAAGCTGGCC AAAACGGCAC CGGAAGCCAA GCTGACGCCG TTGGTGGCCG GCGTGACCGA AAGGGTACAG CGCTATGCCG AGCACCCGCG CCTGCACGCC GATCTGAGGG AATACCTGGA CCAGATATTC AACCTCGCCA TCGATGCCTT GCAACTGTAC AGCCGTAACA AGATCGAGCT GGGCGTGCTG GACTTCGCCG ACCAGGAACA TGCGTTGCTC AGATTGCTGG ACAACCCCGC GGTCATCGAG GTGCTGGAGC AAGAACTGGA CCTGGTCATG GTTGACGAGT TCCAGGACAC CAGCCCTATG CAGTTGGCGA TTTTCCTGAA GCTTGCCCGC ATCGCCAAGC GGGTTTACTG GGTAGGCGAT ATCAAACAGG CGATCTACGG TTTTCGTGGC AGCGACTGCG CCTTGATGCA AGCCATCCTT GGCGCTTTGC CTGGCATGGG CGGGGTCAAA GAGGTATTGC CCAAATCCTG GCGCTCGCGC CCTGAGCTTG TCGAGTTGAC CAACGAAGTG TTCACCCAGG CGTTCAGCAA CAGCCTGTCC GCCGACGAGG TCCGGCTCAC GCCTACTCGA CAGGACCCGC TTGGCGGGCC CGCCTTTGCC AACTGGATAC TCGATGGCAG CAATGCCGAG CAGCAGACCT GTGCACTTGC CGAAGGGATA GGGCAACTGC TCGAAAGCCG CTACCAGGTG TTCGACAAGA CCACCCAGCA GGCCCGTGAC CTGCAGGCTG GCGATATCAC CGTGCTTTGC TACTCCCACA GCAATGTGGC CAAGGTAGCG GCGGCCCTGG CCGCCGCAGG CCTGCCCTGC TCCACGGCCC AGCCCGGGCT GCTGGCAACG CCAGAAGCGA CACTGGCGCT GGCGTGCTTG CGCCGGTTGA ATGACCCGAC GGATACCCTG GCCACCGCCC AGATCGTCTC CATGACCAGC GCCGAGGAAC CAGAAAGCTG GGTTGCAGAG CGCTTGCACT ATCTGCACGC CGGGCACCCG CAAGGCCAAT GGCGAGAACA AACAGTCGAT GCGCATGCAG CACATCCGCT GGTCGCCGAA CTGGCACGGC TACGTGCCGA CCTGCCATTG CTGACGCCGG TCGAGGCGCT GCAGCGCTTG ATCGCCGAAT GCGACTTGGC CCGTTGCGTA ACGGGCTGGT CGACCACGCC GGCACAGGCG CAGAAGCGCC TGGCCAACCT GGACGCGTTG CTTGAACTGG CGCAACGCTA CCAAGACCTC TGTCGCAATG GGCTGGGGGC GGCATCGATT TCCGGGCTGG TGCTCTGGTT GGGGCAAACC GCCGGCGCGG GCAATGATGC GCTGGCAACC CCGGCCCTGG ATGCGGTCCG GGTGATGACT CACCACGCCA GTAAGGGCCT GGAGTGGCCC GTGGTCATCC TGATGGACCT GGCGCGGGAC GTTGGCGAGC GGCTGTGGTC GGTTTCGGCG CAGTCCGACA GTGCCCTGGA CCCGAATGAT CCATTGCGCG ACCGCTTTAT CCGTTACTGG CCGTGGCCAC TGGGCAAGCA GAAAAACGTG CCGCTGGCGG ACACCATCGG CAAAACCCCC GCTGCCAAGG CGTGCCGCGA TGAGGCTGTC GAGGAAGCCA AGCGCCTGCT GTACGTGAGC ATGACCCGCG CCCGTGATTT TCTGGTGATT GCTCGTTCCA GCAGGCGGTT GACTGGGCCG TGGCTAGATT GCGTCCAGGC TCCATGGCTG ACGACCGAAG CAGGCACACA TGAATTGCAG CTGAAAAGTG GAACAACCGT GCGCGTCGAG CATCGCACGC TTGGCGCCGG CAGTGCGCCA GTCATTGCAA CAGCCACCAC CAACCAGCTG CACTGGTTTG CGTCCCCCGA CAGCGTTACA CCTCGATTGC CACTTGGGGT GCAGCCTTCG GCCACCCAGG CCAGCGCGCT TGCTGGTGCA CAGGAAACCT GCCGTATCGG TAGCCGCATC ACCTTGCAAG GCAACCCGGA CATGAGCGCA GTAGGCACTG CGATTCATGC CAGCCTTGGC CTGTCGTTCA GCGACCCGGA GCGCCCGATA AGCCAGGACG AGGTCAACCG ATTGCTGCAG GGCCTGGACG TACTCGAACA CGTCGATGCC CGCCAGGTAC TGGCCCAGGT GACGGCCTTG CATGCCTGGA TTGCAAGTCG CTGGCCCCAC GCCGACGCGG TGGCTGAATA CCCGGTACAA CAGCTGCTGG ATGCCGGCCA GGTACTGGAT GGCCGCATTG ACCTGCTGTT GGCCACCCCA GAGGGTTGGG TGTTGATCGA CCACAAGTCC AACCCGGCAC CCGAGGCGCA ATGGCAGCGG CTGGCGGCAA CGCACGCGGG GCAGTTGCAG GCCTACGCCA AGGCCGTGGA GGCCGCATCA GGCAAGCCGG TGACAGAGGC CTGGCTGTTC TTGCCCGTAG CTGCCGGTGC CGTTCGCGTG TTCTGA
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Protein sequence | MSDNPRITFI SAGAGSGKTY RLTELLYQEL TSQQVQPEGI IATTFTRKAA AELRERVRSH LLDKGQVGLA SAMGQARIGT VNSLCGQLLE HFAFEAGMPP QQRVLEEEQA KVLLNQAVDS VLDGTRMEAF LAISRRLGLE VTLQQSDLPS DSWQDALRRL LDQLRSNDID LERARDFAAR NAQDLLAHFP SMTSSDLDAE LLRTLPDVLA LLQDANSKVK LTATYITLLK DFQRELQQGN ARWSDWAKLA KTAPEAKLTP LVAGVTERVQ RYAEHPRLHA DLREYLDQIF NLAIDALQLY SRNKIELGVL DFADQEHALL RLLDNPAVIE VLEQELDLVM VDEFQDTSPM QLAIFLKLAR IAKRVYWVGD IKQAIYGFRG SDCALMQAIL GALPGMGGVK EVLPKSWRSR PELVELTNEV FTQAFSNSLS ADEVRLTPTR QDPLGGPAFA NWILDGSNAE QQTCALAEGI GQLLESRYQV FDKTTQQARD LQAGDITVLC YSHSNVAKVA AALAAAGLPC STAQPGLLAT PEATLALACL RRLNDPTDTL ATAQIVSMTS AEEPESWVAE RLHYLHAGHP QGQWREQTVD AHAAHPLVAE LARLRADLPL LTPVEALQRL IAECDLARCV TGWSTTPAQA QKRLANLDAL LELAQRYQDL CRNGLGAASI SGLVLWLGQT AGAGNDALAT PALDAVRVMT HHASKGLEWP VVILMDLARD VGERLWSVSA QSDSALDPND PLRDRFIRYW PWPLGKQKNV PLADTIGKTP AAKACRDEAV EEAKRLLYVS MTRARDFLVI ARSSRRLTGP WLDCVQAPWL TTEAGTHELQ LKSGTTVRVE HRTLGAGSAP VIATATTNQL HWFASPDSVT PRLPLGVQPS ATQASALAGA QETCRIGSRI TLQGNPDMSA VGTAIHASLG LSFSDPERPI SQDEVNRLLQ GLDVLEHVDA RQVLAQVTAL HAWIASRWPH ADAVAEYPVQ QLLDAGQVLD GRIDLLLATP EGWVLIDHKS NPAPEAQWQR LAATHAGQLQ AYAKAVEAAS GKPVTEAWLF LPVAAGAVRV F
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