| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3104 |
|---|
| Symbol | |
|---|
| ID | 5870889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3472032 |
|---|
| End bp | 3472958 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548220 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001669332 |
|---|
| Protein GI | 167034101 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.459931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCAGC TCCACGATGT CGACCTGAAG CTGCTCAGGG TATTCACCAC TATCGTCCGG
TGCGGCGGCT TTTCCGCAGC GCAAGCGGCG CTCAATGCCG GGCAGTCGAC CATCAGCGAA
CAGATGTCGC ACCTGGAAAC CCGCCTGGGG GTCAGGCTTT GCCAGCGCGG GCGCAGTGGC
TTTCGCCTGA CCGAGCAAGG GGTGGCAATC CATGAGGCAA CCCTGCGCCT GCTCAGTGCC
GTGGAGAGCT TTTGCCTGGA CGCCGACGTG CTCAAGCAGC ACATCAGCGG CAAGCTCAAC
CTGGGCATCA TCGACTCCAC CCTGACCGAC CCCGTCTCGC CACTGCCGCG CACCACCCAA
CGCTTCGTTT CACGTGGGCA TGATGCCCAC CTGCACATCT ACATCGGTGC CCCGGCAGAA
CTTGAAGAGC GCGTGCTGGA CGGCAGGCTG CACCTGGCAA TCGGCCATTT TCCCTTGCGC
GTCGCCGGGC TGTCCTACCT GCCGCTTTAT GACGAGGCGC TTGGCCTGTA CTGCGGCAGG
CGTCACCCGC TGTTTGCCAG CAATGCGGGC AACGGCCGAC TGATGGAGGA CGTGCGCCAA
AGCCGTATCG TGGTGCGCGG CTACATGCAG CAGTACGACC TGGAGCAGTT GGGCATCACC
AAGGCCGATG CGACGGTGGA GAACATCGAG GCAGCGGCGA TCCTGATCAT TTCCGGGGCC
TATATCGGCT TTTTGCCCGT GCACTTTGCC GAGCAATGGG TCAAGACCGG CGAAATGCGC
CGCCTGGGGG CCAACACGCT GGACCTCAGC TCGCCCTTCG ATGTGGCTAC CCGGCGCGGT
GTGTCGCGCC CGCCTATCCT GCAGGCCTTT CTGGAGGATT TGGCTGCCTG TACCGTGAGG
ACGGCCTCTC ATCTCGACGC CGTCTAG
|
|---|
| Protein sequence | MIQLHDVDLK LLRVFTTIVR CGGFSAAQAA LNAGQSTISE QMSHLETRLG VRLCQRGRSG
FRLTEQGVAI HEATLRLLSA VESFCLDADV LKQHISGKLN LGIIDSTLTD PVSPLPRTTQ
RFVSRGHDAH LHIYIGAPAE LEERVLDGRL HLAIGHFPLR VAGLSYLPLY DEALGLYCGR
RHPLFASNAG NGRLMEDVRQ SRIVVRGYMQ QYDLEQLGIT KADATVENIE AAAILIISGA
YIGFLPVHFA EQWVKTGEMR RLGANTLDLS SPFDVATRRG VSRPPILQAF LEDLAACTVR
TASHLDAV
|
|---|
| |