Gene PputGB1_3069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3069 
Symbol 
ID5870854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3423216 
End bp3424166 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content64% 
IMG OID641548185 
ProductAraC family transcriptional regulator 
Protein accessionYP_001669297 
Protein GI167034066 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.00244653 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCGGG TCGGCTATTT GATCACCGAA GGCTTCCAGA TCATGTCACT GGCCACGCAA 
ACCGTGTTCG AGCTCGCCAA CATCGTCGCG GGCAGCGCGG TTTACCGGAT CGAGAATTTT
TCCATCGAAG GCGGCATGGT GCGCTCCTCG CTGGGGATGC ATATCGACAC GCTACCCATG
GCCGCCCCGG GCCTGGCGGA CACCTGGATG GTCACTGGCA CGTTGACGCC CTGGACGCCG
CCCGGTGCAG AGGTACTGGC CTGCGTGCGG GGCTTCGTCG ATGCTGCGCG GCGCACAGCT
GGGCTTTGCA CCGGCTGTTT CGTGCTGGCG CAGGCAGGCG TGCTGGATGG GCGGCGCGCA
ACGACCCACT GGGCCTATGC GCCCAAGCTG CGTGAATTGC ACCCCAAGAT CGATGTCGAG
GAAGACCGGA TTTTCATCGT CGATGGAAAC ATATGGACGT CTGCCGGCAT GACCGCCGCC
CTGGACATGG CGTTGGGCAT GGTGGAAAAG GACCTGGGCG CCGAGATGGC CAGGTCGGTT
GCGCACAAGA TGGTCATGCA CCAACGCCGT TCCGGCGGGC AGTCCCAGCA CTCCGAACTG
TTGTCGCTTG CGCCCAAGTC GGACCGTATC CAGAGCGCGC TGGACTACGC ACGCAAACAC
CTAAGCCGCC CATTGAGCGT GGAGGAGCTT GCCGAAGTGG TGCACCTGAG CCCGCGCCAA
TTCACCCGTG TGTTCACCGC CGAGACCGGG CAGTCACCGG CCAAGGCCAT CGAGAGCCTG
CGCCTGGAGG CTGCCCGGCT GATGATCGAG CAGAGTCGGC ACAGCCTGGA TGTGGTGGCC
AAGGAGGCTG GCTTCAGGGA CCGTCGCCAT ATGCGCGAGG TGTTCATCCG TGGGTTTGGT
GTACCCCCTC AAGCCGTGCG AAGAGATGCT CGGCAGGTGC CGGCCCTCTG A
 
Protein sequence
MHRVGYLITE GFQIMSLATQ TVFELANIVA GSAVYRIENF SIEGGMVRSS LGMHIDTLPM 
AAPGLADTWM VTGTLTPWTP PGAEVLACVR GFVDAARRTA GLCTGCFVLA QAGVLDGRRA
TTHWAYAPKL RELHPKIDVE EDRIFIVDGN IWTSAGMTAA LDMALGMVEK DLGAEMARSV
AHKMVMHQRR SGGQSQHSEL LSLAPKSDRI QSALDYARKH LSRPLSVEEL AEVVHLSPRQ
FTRVFTAETG QSPAKAIESL RLEAARLMIE QSRHSLDVVA KEAGFRDRRH MREVFIRGFG
VPPQAVRRDA RQVPAL