Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3069 |
Symbol | |
ID | 5870854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 3423216 |
End bp | 3424166 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548185 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001669297 |
Protein GI | 167034066 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.00244653 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCGGG TCGGCTATTT GATCACCGAA GGCTTCCAGA TCATGTCACT GGCCACGCAA ACCGTGTTCG AGCTCGCCAA CATCGTCGCG GGCAGCGCGG TTTACCGGAT CGAGAATTTT TCCATCGAAG GCGGCATGGT GCGCTCCTCG CTGGGGATGC ATATCGACAC GCTACCCATG GCCGCCCCGG GCCTGGCGGA CACCTGGATG GTCACTGGCA CGTTGACGCC CTGGACGCCG CCCGGTGCAG AGGTACTGGC CTGCGTGCGG GGCTTCGTCG ATGCTGCGCG GCGCACAGCT GGGCTTTGCA CCGGCTGTTT CGTGCTGGCG CAGGCAGGCG TGCTGGATGG GCGGCGCGCA ACGACCCACT GGGCCTATGC GCCCAAGCTG CGTGAATTGC ACCCCAAGAT CGATGTCGAG GAAGACCGGA TTTTCATCGT CGATGGAAAC ATATGGACGT CTGCCGGCAT GACCGCCGCC CTGGACATGG CGTTGGGCAT GGTGGAAAAG GACCTGGGCG CCGAGATGGC CAGGTCGGTT GCGCACAAGA TGGTCATGCA CCAACGCCGT TCCGGCGGGC AGTCCCAGCA CTCCGAACTG TTGTCGCTTG CGCCCAAGTC GGACCGTATC CAGAGCGCGC TGGACTACGC ACGCAAACAC CTAAGCCGCC CATTGAGCGT GGAGGAGCTT GCCGAAGTGG TGCACCTGAG CCCGCGCCAA TTCACCCGTG TGTTCACCGC CGAGACCGGG CAGTCACCGG CCAAGGCCAT CGAGAGCCTG CGCCTGGAGG CTGCCCGGCT GATGATCGAG CAGAGTCGGC ACAGCCTGGA TGTGGTGGCC AAGGAGGCTG GCTTCAGGGA CCGTCGCCAT ATGCGCGAGG TGTTCATCCG TGGGTTTGGT GTACCCCCTC AAGCCGTGCG AAGAGATGCT CGGCAGGTGC CGGCCCTCTG A
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Protein sequence | MHRVGYLITE GFQIMSLATQ TVFELANIVA GSAVYRIENF SIEGGMVRSS LGMHIDTLPM AAPGLADTWM VTGTLTPWTP PGAEVLACVR GFVDAARRTA GLCTGCFVLA QAGVLDGRRA TTHWAYAPKL RELHPKIDVE EDRIFIVDGN IWTSAGMTAA LDMALGMVEK DLGAEMARSV AHKMVMHQRR SGGQSQHSEL LSLAPKSDRI QSALDYARKH LSRPLSVEEL AEVVHLSPRQ FTRVFTAETG QSPAKAIESL RLEAARLMIE QSRHSLDVVA KEAGFRDRRH MREVFIRGFG VPPQAVRRDA RQVPAL
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