| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3046 |
|---|
| Symbol | |
|---|
| ID | 5870831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3398040 |
|---|
| End bp | 3399332 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548162 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_001669274 |
|---|
| Protein GI | 167034043 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCGT TGTACTGCCT GCGCCGCTCA GCAGCCCTGT TGCTTTGCAC GGCATCCTTG
TTCGGCAATG CGGCCTGGGC TGGTGGCATC CTCATCTATG AAGCCGGCCA GGAGGGCAAC
GGCCTGGCCA ATGCCGGGTC TGCCGCACTG GCCACCGACC CCAGCGTGCT GATGAGCAAC
CCGGCGGGCA TCACCCGGCT CAAAGGCACT CAGATTAGCG CCAACGCCCA GGTCATTCTT
GGCGACCTGC GTTTTTCCCG CGACGCCGGC AACCAGTTCG ACGGCAACGA AGGCGGCAAT
GCGCTGCAAT ACCTGCCCGG TACCAGCCTG TTCATCAGCC ACCAGCTCGA CGAGCGCTCT
GCCATCGGTT TCGGCATGTA TGGCAACTTT GGCCTGGCGC TGGACTACGA CGACGACTGG
GCCGGCCGCT ATTTCACCCA GGAGGCCGCA GTGATTGGCG TTTCGATGCA ACCGACCTGG
GCCTACAAGT TCACCGACGA CCTGTCCATC GGGGTTGGCC CGCGCATCAT GGTCGGCTAC
TACCGCACCG AGATGGCCAT CAACAATAAC CTGCTGGGCC TGGCCGACCG GCCCGATGGC
CAGCTGGAGT ACAAGGACAC CGATGTCGGC GTAGGCGTCA ACCTGGGCCT GTTGTACCAG
CTTGATGCCC GCACCCGTGT GGGCCTGGCC TACACCAGCA AGGTCAAGCT GGAGTTCGAG
GACAAACCGC ACCTCAAGGA CATCGACAAC CCGCTGCTCA ACGTCGCCCT GCGCCGCCTC
GACGTAGATT CGCTGGAGCT CGACCTCAAC GTGCCGCAAA CCGTCACCTT CAGCATCGCC
CACGAGCTGG ACGACCAGTG GACCCTGCTC GGCAGCCTCA ACTGGCAGGA CTGGAGCGAC
TTTGGCGACG TCGGCGTGGA GGTGGACAGC GACGCTGGCG GCACCAGCCG CACCGTCGAC
CGCCAATACA AGGACACCTG GCATGCCTCC GTGGGCGCAC AGTACCAGGC CACCCGACAA
TGGCGCTGGA GCGTCGGCCT GGGTTACGAC AGCTCGGCCG TGGACGATAA GGACCGCACG
GTCGACAACC CCATGGGCGA GGCCTGGCGG TTGGCTACCG GGGTCAACTA CCAGGTCGAT
GAGGGCCTGG AGCTGCACCT GGCCTACACC TTGGTGTGGC TCGGCGACAT GGACGTCGAG
CAGACCAAGG CGCGCTCGGG CAACACGCTG TCAGGCAGCT ATGACAACAG CGCTTTGCAC
ATCATTGGCG GTGGCGCCAC CTGGCGCTTC TGA
|
|---|
| Protein sequence | MESLYCLRRS AALLLCTASL FGNAAWAGGI LIYEAGQEGN GLANAGSAAL ATDPSVLMSN
PAGITRLKGT QISANAQVIL GDLRFSRDAG NQFDGNEGGN ALQYLPGTSL FISHQLDERS
AIGFGMYGNF GLALDYDDDW AGRYFTQEAA VIGVSMQPTW AYKFTDDLSI GVGPRIMVGY
YRTEMAINNN LLGLADRPDG QLEYKDTDVG VGVNLGLLYQ LDARTRVGLA YTSKVKLEFE
DKPHLKDIDN PLLNVALRRL DVDSLELDLN VPQTVTFSIA HELDDQWTLL GSLNWQDWSD
FGDVGVEVDS DAGGTSRTVD RQYKDTWHAS VGAQYQATRQ WRWSVGLGYD SSAVDDKDRT
VDNPMGEAWR LATGVNYQVD EGLELHLAYT LVWLGDMDVE QTKARSGNTL SGSYDNSALH
IIGGGATWRF
|
|---|
| |