| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2776 |
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| Symbol | |
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| ID | 5870562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3118706 |
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| End bp | 3119224 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641547894 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001669006 |
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| Protein GI | 167033775 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.496256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.273091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTG ACGCGTATAT CCAAATCGAC GGCATCCCAG GCGAAGTACT GGATGAAAAA
CACAAGGACT GGATCGAAGT GCTGGGCTAC GAGTACGGCG CCACCCAGGC AACCTCGGCT
ACCGCCAGCT CCTCGGGTGG TGCGTCTTCC GAGCGTGTTG CCCTGAGCGA CTTCAAGATC
CGCAAGGCCG TCGACAAGGC TTCGGCCAAG CTGTTCGAGC ACTGCTGCAC CGGCAAGCAC
ATCGCCAAGC TGAAGCTGAA CGTGAACCGC GCCGGTGGCG ACAAGGTCAC CTACCTGACC
ATCGACATGG AAGAAGTCGT GGTGTCGTCG GTCAAGTTCA TCGCCGGTGG CAATCAAGGC
GGTGAAGACA AGGCGGTCAG CGACCTGCCT GTAGAAGAAA TCAGCTTCAA CTTTGCCCGT
ATCAAGACCA CCTACACCCA GCAGAACCGC ACCGACGGCC AGGCCGGCGG CAACATCGTC
GGTGGCTGGG ACCGTACCGC GAACAAAGTG TTCGCCTAA
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| Protein sequence | MAFDAYIQID GIPGEVLDEK HKDWIEVLGY EYGATQATSA TASSSGGASS ERVALSDFKI
RKAVDKASAK LFEHCCTGKH IAKLKLNVNR AGGDKVTYLT IDMEEVVVSS VKFIAGGNQG
GEDKAVSDLP VEEISFNFAR IKTTYTQQNR TDGQAGGNIV GGWDRTANKV FA
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