| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2760 |
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| Symbol | |
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| ID | 5870546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3094169 |
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| End bp | 3096010 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641547878 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001668990 |
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| Protein GI | 167033759 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.68949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATGG AACTGGCCTC CGCGCTGCTA TCGCCGCAGA ACCGCCGGCT GTTCAAGTTT
CACAACCTGG CCAACCCTGA GCAGGAACTG TTGCTGGAAA CCTTCAAGGG CGTCGAGGGC
CTTTCGCGGG CGTTCAACTA CGAACTGCTG CTGATCTGCG AAGACTCTGG CGTGCCGCTT
AAATCCATGA TGGGCCAGCA CGTGAGCATC GAGATCGAGT TGGCCGAAGG TGCTCCACGC
CACATCACCG GTTACCTTAC GCGCTTTGCC AGCATTGGCA GCGATGGCGG CATGGCCCGT
TACACCGCCA CCCTCAACCC CTGGTTTTCG ATGCTGAAGA ACCGCTTCGA CACGCGGATC
TTCCAAGGCA ACACGGTCGA GGAAGTGGTC ACCGAGGTAT TCGCCCTGTG TCCGGCTTTC
TCCCGCCACG AGTTCCGCCT GACCCGCCCG CAGAAGCGCT ACACCTACAT CACCCAGTAC
CGCGAAACCG ACTTCAATTT CGTCCAGCGC CTGCTGGAGG AAGAGGGGAT GTTCTATTAC
TTCGAGCACA CCGCAGAAGG CCACACCATG ATCATCTGCG ATGACTCCAG CACACTGGTG
GACATCCCCG AGCAGCCGCA AATCCGTTTC CACAGCGCCT CGGTTACCGA GACCGCCGAC
TCCATCACCC AGTGGAGCGG CAACCGCCAG CTGCAGTCCG GCAAGATGGC CACGCAGACC
TTCGATTACC GCCAGCCCAA CAACCGCCTG CCGGTGGCGC TGAACAGCGT GAACAAGCAG
GGCGATGTCG AGAACTTCGA GATCTACGAC TTCCCCGGTC AGTACACCCA CGGCACCTAC
GATGAAGGCG AAACCCTGCT GCGCCTACGT ATCGAAGCGC TGGAGCTGCG CGGCAAAAAG
TTCGAAGGCG CCAGTAATTG CCGCGCCATG AAGCCCGGCT ATACCTTCGA ACTGCTGCAG
CACTACAGCC ACGATCAAGG CGCCGTAGAG GACCGACAGT TCCTGCTGAT GAGCGTGGAA
AGCGAAGGCC ACAACAACTA CCTCAGCGGC CAACAGGCGA GCTATTTCAA CACGTTCAGT
TGCGTGCGCA AGAAGATCCC GTTCCGCCCG CAACTGAGCA CTCCCCGGCC GACCATCGCC
GGCCCGCAGA CTGCCATCAT CGTTGGCCCA CCCGGCGAAG AGATATTCAC CGACGAACTG
GGGCGGGTGA AAATCCAGTT TCACTGGGAC CGTAAAGGCC AGCACAACGA CCACAGTTCG
TGCTGGGTAC GCGTCGCCCA ATCCGGCGCC AGTGGCGGCT TCGGCAGCAT CCAGATCCCG
CGTGTGGGCG ATGAAGTGGT GGTAGTGTTC CTCGACGGCA ACCCGGACCG CCCGTTGATC
ATGGGCAGCC TGTACAACAG CAGCAACACC CCGCCGTGGG CACTGCCGGC GAACAAGACC
CAGAGTGGGT TCCTGACGCG CTCTACCAAA GGCAAAGGGT CGAATGCCAA CTTCTTCCGC
TTCGAAGACA AGGCCGGCGC CGAGCAAATC ATCATGCATG CTGAGCGCAA CCTGGATACC
GAGGTTGAGG CAGATGAGAG TCTCAAGGTG GGTGGCAATC GAACGATCAA TGTCGAAGGT
AAGCATTCCG AGACGATCAA GCTGGAAACC AGCATTGCGG TGGAAGAGGG GTCGTACTTT
GTGACCGTGG ATCAAGGGGC GGTGAAAATT AAGGCGGCAA CGTCTATTAC GCTTGAGGTC
GGAAACAGCA AGCTGGAGAT GAAGTCGGAT GGCACGATTA CCCTGTCAGG TATCACTGTG
GACGTTGCAG GCAGCACGAT AATTAATCTG AACAAGTCTT GA
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| Protein sequence | MIMELASALL SPQNRRLFKF HNLANPEQEL LLETFKGVEG LSRAFNYELL LICEDSGVPL
KSMMGQHVSI EIELAEGAPR HITGYLTRFA SIGSDGGMAR YTATLNPWFS MLKNRFDTRI
FQGNTVEEVV TEVFALCPAF SRHEFRLTRP QKRYTYITQY RETDFNFVQR LLEEEGMFYY
FEHTAEGHTM IICDDSSTLV DIPEQPQIRF HSASVTETAD SITQWSGNRQ LQSGKMATQT
FDYRQPNNRL PVALNSVNKQ GDVENFEIYD FPGQYTHGTY DEGETLLRLR IEALELRGKK
FEGASNCRAM KPGYTFELLQ HYSHDQGAVE DRQFLLMSVE SEGHNNYLSG QQASYFNTFS
CVRKKIPFRP QLSTPRPTIA GPQTAIIVGP PGEEIFTDEL GRVKIQFHWD RKGQHNDHSS
CWVRVAQSGA SGGFGSIQIP RVGDEVVVVF LDGNPDRPLI MGSLYNSSNT PPWALPANKT
QSGFLTRSTK GKGSNANFFR FEDKAGAEQI IMHAERNLDT EVEADESLKV GGNRTINVEG
KHSETIKLET SIAVEEGSYF VTVDQGAVKI KAATSITLEV GNSKLEMKSD GTITLSGITV
DVAGSTIINL NKS
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