Gene PputGB1_2635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2635 
SymbolligD 
ID5870424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2951369 
End bp2953870 
Gene Length2502 bp 
Protein Length833 aa 
Translation table11 
GC content63% 
IMG OID641547758 
ProductATP-dependent DNA ligase 
Protein accessionYP_001668870 
Protein GI167033639 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02779] DNA polymerase LigD, ligase domain
[TIGR02778] DNA polymerase LigD, polymerase domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.232561 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.576376 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGC CCCTGCAGGA ATATGCGCGC AAGCGTGACT TCAGCGCCAC GCCCGAGCCA 
GACGGCAGGC GCAGCCGTGG TAAACAGGCC CACGCCCTGC TGTTCTGCAT CCAGAAGCAT
GACGCCAGCC ACCTGCACTA TGACTTCCGC CTGGAGCTTG ATGGCACCCT GAAGAGCTGG
GCGATCCCCA AGGGGCCGTC GCTGGACCCC AAGGTGCGCC GACTGGCCGT GCATGTGGAG
GACCATCCGC TGGACTACGC CGACTTCGAG GGGCATATCC CCGAAGGCCA CTATGGTGCA
GGCGATGTGA TCGTTTGGGA CCGTGGCATA TGGGAGCCCG AGGGCGATGC CCGTGAGGCT
TATGCCAAAG GCAAGCTGCG CTTTCGCCTG CAGGGTGAAA AGCTCAGTGG TGTGTGGAAC
CTGTTTCGCA CCCACCTGGC CGGCAAAAAG GAGCAATGGA TGCTGGTGAA GTCCCACGAT
GGCCAGGCGC GCAGCGAAGC TGACTACAGC ATTGTCGAGG CCCAGCCTGA CAGCGTGCTC
AGCGACCGCA CCTTGTTGCC ACGCAAGGCC GCTGCAAAAA AGGCCACTAC ACCGCGCACC
AACCGTCAAC GCACCGGAAA AGGCCAGCAT GCGCCGTTGC CAGCGCAGCT ACAGCCGCAG
CTTGCAACGT TGGTGGATTC CCCGCCTAGC GGCGACTGGC GCTATGAAGT CAAGTTCGAC
GGCTACCGCA TCATGGCCCG CATCGACGGC GAAGATATCC GCCTGTTCAC CCGCAATGGC
CACGACTGGA GCAGCAAAAT GCCCCGGCAG GTCGCTGCCT TGCGCGCGCT GGGTGTCGGT
TCGGCCTGGC TCGACGGCGA AATGGTGGTG GTTGACGAAA ATGGCGCAGC AGACTTCCAA
GCCTTGCAGA ACGCCTTCGA TACCGAGCAT GACGAAGGCA TTGCCTATTA CCTGTTCGAC
CTGCCGTTTC TTGGTGGTCG GGACCTGCGT CAGGTACCGC TGCAGGGCCG CCGCGACACC
TTGCGCCAAC TGCTTGGGCA CGATGAGTCG GACGTACTCA AGTTTTCTGC CGACTTTGAC
CAGCCTGTCG AATCCCTGCT CGACAGCGCC TGCCGTCTGC AGCTCGAAGG GCTGATCGGC
AAACGCGTCG ACAGCCCGTA CAGTGGCCGC CGCAGCTCGG ACTGGGTCAA GCTCAAGTGC
AAGCAACGCC AGGAATTCGT GATCGTCGGC TACACCGACC CCAAAGGCAG CCGCAGCGGC
TTCGGGGCCT TGCTGCTGGC TCTGCACGAC AACGACAGTG GTGAGCTGCG CTATGCCGGA
AAGGTAGGTA CCGGCTTCAG TGATACCACC CTGGCCACCC TGCTTGCCCG GTTGACGTCT
CTGGAAACTG CCAAGCCAGC CGTGGCCAGG CCGCCCACCG GTGCCGAAGC CCGTGGTGTG
CATTGGCTGC AACCGAAACT GCTCGCTGAA GTCGCCTATG CCCAGATGAC CCGTGATGGC
ATCGTACGCC ACTCGGTTTT CCACGGCCTG CGCGACGACA AGGCGGCAAC AGCTATCGAC
CTGGAGCGCG CCATGCCCGC CAAGACCGTG CCTAAGCGCA GCAAGCAGGC CAAGACGTCT
GAAACCCCGG ATGAACTGCA CCTGACACAT CCTGACAGGG TGATCGACGC CACCCTGGGT
GCGACCAAGC GCGAAGTCGC CGAATACTAT GCCGACATCA GCCAATGGAT CCTGCCACAG
CTCAAGCACC GCCCGGTGGC GCTGGTTCGC GCACCGGACG GCCTGGCCGG CGAGCTGTTC
TTCCAAAAGA ACGCGGGCCA GCTGCACATA CCCAACGTGC TTAGCTACGA AAAGGCCGAG
GCCGGCCAGG CGGCGATGGT TATCAATCGC CCAGACACGC TGCTAGGCGC GGTGCAGATG
AACATGCTTG AACTGCACAC CTGGAACGCC ACGGACAAGG ACTTCGACAA ACCCGACCGC
TTCGTGCTCG ACCTGGACCC TGACCCCGCG TTGCCCTGGA AGGCCATGCT GGAGGCGACT
CAGCTCACCC TTACCCTGCT TGACGAGCTA GGCCTGAAGG TGTTCCTGAA AACCAGTGGA
GGCAAAGGCA TTCATGTTGT AGTGCCGTTG ACCCGGCGCG CCGGCTGGGA CGAAGTCAAA
GGCTTCAGCC ACGCCATCGT CAACTATCTG GCCACGTTGT TCCCGGACCG TCTCAGCGCG
GTGTCTGGGC CGAAAAACCG TGTTGGGCGC ATCTTCATCG ATTACCTGCG CAACAGCAAA
GGCGCCACCA CCGCGTGCGC TTACTCCCTG CGAGCCCGAG AGGGGCTGCC TGTTTCGGTG
CCCATATGGC GCGAGGAGCT GGTGCAGCTC AAGGCCGCCA ACACGTGGAA CATCGCCAAC
GTGCGCGAGC GTCTCGCAGC AGTCGAAGAC CCATGGGCCG ACCTGGGCAA GGTGCGTCAG
TCCATCACTG CCCGCATGCG CAAGCAACTG GGGCTCTCGT GA
 
Protein sequence
MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR LELDGTLKSW 
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAREA
YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK EQWMLVKSHD GQARSEADYS IVEAQPDSVL
SDRTLLPRKA AAKKATTPRT NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD
GYRIMARIDG EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES DVLKFSADFD
QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC KQRQEFVIVG YTDPKGSRSG
FGALLLALHD NDSGELRYAG KVGTGFSDTT LATLLARLTS LETAKPAVAR PPTGAEARGV
HWLQPKLLAE VAYAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS
ETPDELHLTH PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA TDKDFDKPDR
FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK
GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR IFIDYLRNSK GATTACAYSL RAREGLPVSV
PIWREELVQL KAANTWNIAN VRERLAAVED PWADLGKVRQ SITARMRKQL GLS